Detailed information NTG0049376

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SSAL_RS00735
• Genome accession: NC_017594
• Coordinates: 137796..138224 (+)
• Length: 142 a.a.
• NCBI ID: WP_014632541.1
• Uniprot ID: -
• Organism: Streptococcus salivarius 57.I
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 132796..143224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSAL_RS00715 (Ssal_00141)	-	135149..135511 (+)	363	WP_002887019.1	DUF1033 family protein	-
SSAL_RS00720 (Ssal_00142)	comGA/cglA/cilD	135590..136531 (+)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
SSAL_RS00725 (Ssal_00143)	comYB	136413..137513 (+)	1101	WP_118172207.1	competence type IV pilus assembly protein ComGB	Machinery gene
SSAL_RS00730 (Ssal_00144)	comYC	137522..137836 (+)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
SSAL_RS00735 (Ssal_00145)	comYD	137796..138224 (+)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
SSAL_RS00740 (Ssal_00146)	comGE	138256..138486 (+)	231	WP_013991265.1	competence type IV pilus minor pilin ComGE	-
SSAL_RS00745 (Ssal_00147)	comYF	138473..138910 (+)	438	WP_014632542.1	competence type IV pilus minor pilin ComGF	Machinery gene
SSAL_RS00750	comGG	138888..139205 (+)	318	WP_045001363.1	competence type IV pilus minor pilin ComGG	-
SSAL_RS00755 (Ssal_00149)	comYH	139250..140206 (+)	957	WP_014632544.1	class I SAM-dependent methyltransferase	Machinery gene
SSAL_RS00760 (Ssal_00150)	-	140263..141456 (+)	1194	WP_045001366.1	acetate kinase	-
SSAL_RS00765 (Ssal_00151)	-	141707..141904 (+)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
SSAL_RS00770 (Ssal_00152)	-	141916..142572 (+)	657	WP_014632546.1	type II CAAX endopeptidase family protein	-
SSAL_RS00775 (Ssal_00153)	-	142650..143096 (+)	447	WP_045001368.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15729.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=49376 SSAL_RS00735 WP_014632541.1 137796..138224(+) (comYD) [Streptococcus salivarius 57.I]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=49376 SSAL_RS00735 WP_014632541.1 137796..138224(+) (comYD) [Streptococcus salivarius 57.I]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTAAGTTTGTCAGGCTCAGTCACTGGTATTTTTCAACAGGTTGAAACGAACCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTGGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387