NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	IDM46_RS10715	Genome accession	NZ_CP061714
Coordinates	2289373..2289807 (+)	Length	144 a.a.
NCBI ID	WP_185115687.1	Uniprot ID	A0A7X0UXK2
Organism	Luteimonas sp. MC1825
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2284373..2294807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IDM46_RS10685 (IDM46_10685)	-	2285171..2285902 (-)	732	WP_185115682.1	methyltransferase domain-containing protein	-
IDM46_RS10690 (IDM46_10690)	-	2285899..2286558 (-)	660	WP_185115683.1	class I SAM-dependent methyltransferase	-
IDM46_RS10695 (IDM46_10695)	-	2286555..2286902 (-)	348	WP_185115684.1	DUF2304 domain-containing protein	-
IDM46_RS10700 (IDM46_10700)	-	2286899..2287639 (-)	741	WP_221441878.1	glycosyltransferase family 2 protein	-
IDM46_RS10705 (IDM46_10705)	-	2287650..2288459 (-)	810	WP_185115685.1	glycosyltransferase family A protein	-
IDM46_RS10710 (IDM46_10710)	-	2288459..2288842 (-)	384	WP_185115686.1	hypothetical protein	-
IDM46_RS10715 (IDM46_10715)	pilA2	2289373..2289807 (+)	435	WP_185115687.1	pilin	Machinery gene
IDM46_RS10720 (IDM46_10720)	-	2289882..2291798 (+)	1917	WP_185115688.1	hypothetical protein	-
IDM46_RS10725 (IDM46_10725)	-	2292384..2293556 (+)	1173	WP_185115689.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
IDM46_RS10730 (IDM46_10730)	-	2293557..2294267 (+)	711	WP_185115690.1	WbqC family protein	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 14878.26 Da Isoelectric Point: 9.0090

                                >NTDB_id=484347 IDM46_RS10715 WP_185115687.1 2289373..2289807(+) (pilA2) [Luteimonas sp. MC1825]

MKKMQKGFTLIELMIVIAILGILMAIAIPAYQDYTVRAKVSESMQMAAPAKLAVAETVSSKGSLGAVTAANSGYSFPGAT

SYVSNVVITDATGVITVTAKNTGNTAANANLVLTPTETAAGSGQLVWACTNSTIPDKYLPSQCR

Nucleotide

Download Length: 435 bp

                                >NTDB_id=484347 IDM46_RS10715 WP_185115687.1 2289373..2289807(+) (pilA2) [Luteimonas sp. MC1825]

ATGAAGAAGATGCAGAAGGGCTTTACCCTGATCGAGCTGATGATCGTGATCGCGATCCTCGGCATCCTGATGGCCATCGC

GATCCCGGCCTACCAGGACTACACCGTCCGCGCGAAGGTCTCCGAGTCGATGCAGATGGCGGCACCGGCCAAGCTTGCGG

TCGCCGAAACCGTTTCGTCCAAGGGCAGCTTGGGCGCCGTCACCGCCGCCAACAGCGGTTACAGCTTTCCGGGTGCTACC

AGCTATGTCAGCAACGTGGTGATCACCGATGCCACGGGTGTAATTACGGTCACTGCCAAGAACACTGGCAACACTGCCGC

GAATGCCAATCTCGTCCTGACCCCGACGGAGACCGCTGCTGGCTCGGGACAGCTTGTCTGGGCGTGCACCAACTCGACCA

TCCCTGACAAATATCTGCCTTCGCAGTGCCGTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(36-144)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X0UXK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila str. Paris	52.143	97.222	0.507
pilA2	Legionella pneumophila strain ERS1305867	51.429	97.222	0.5
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	38.298	100	0.5
comP	Acinetobacter baylyi ADP1	48.322	100	0.5
pilA	Ralstonia pseudosolanacearum GMI1000	41.667	100	0.486
pilA/pilA1	Eikenella corrodens VA1	40.361	100	0.465
pilE	Neisseria gonorrhoeae strain FA1090	38.462	100	0.451
pilE	Neisseria gonorrhoeae MS11	38.182	100	0.438
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.254	98.611	0.417
pilA	Acinetobacter baumannii strain A118	39.041	100	0.396
pilA	Pseudomonas aeruginosa PAK	37.086	100	0.389
pilA	Haemophilus influenzae 86-028NP	46.218	82.639	0.382
pilA/pilAII	Pseudomonas stutzeri DSM 10701	38.194	100	0.382
pilA	Haemophilus influenzae Rd KW20	43.443	84.722	0.368

Detailed information NTG0484347