Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ICJ54_RS00235 | Genome accession | NZ_CP061335 |
| Coordinates | 63231..64229 (-) | Length | 332 a.a. |
| NCBI ID | WP_189121430.1 | Uniprot ID | - |
| Organism | Pseudomonas asiatica strain C1 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58231..69229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICJ54_RS00215 (ICJ54_00215) | argS | 59302..61038 (+) | 1737 | WP_013974613.1 | arginine--tRNA ligase | - |
| ICJ54_RS00220 (ICJ54_00220) | - | 61040..61738 (+) | 699 | WP_189121429.1 | SPOR domain-containing protein | - |
| ICJ54_RS00225 (ICJ54_00225) | - | 61882..62301 (-) | 420 | WP_013974614.1 | TM2 domain-containing protein | - |
| ICJ54_RS00230 (ICJ54_00230) | - | 62468..63103 (+) | 636 | WP_085720864.1 | C40 family peptidase | - |
| ICJ54_RS00235 (ICJ54_00235) | pilT | 63231..64229 (-) | 999 | WP_189121430.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ICJ54_RS00240 (ICJ54_00240) | - | 64295..64981 (+) | 687 | WP_015272147.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ICJ54_RS00245 (ICJ54_00245) | proC | 65020..65838 (+) | 819 | WP_015272148.1 | pyrroline-5-carboxylate reductase | - |
| ICJ54_RS00250 (ICJ54_00250) | - | 65849..66439 (+) | 591 | WP_013974619.1 | YggT family protein | - |
| ICJ54_RS00255 (ICJ54_00255) | - | 66539..67678 (+) | 1140 | WP_013974620.1 | homoserine O-acetyltransferase | - |
| ICJ54_RS00260 (ICJ54_00260) | metW | 67686..68306 (+) | 621 | WP_015272149.1 | methionine biosynthesis protein MetW | - |
| ICJ54_RS00265 (ICJ54_00265) | - | 68329..68763 (+) | 435 | WP_013974622.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 332 a.a. Molecular weight: 35806.54 Da Isoelectric Point: 6.6956
>NTDB_id=481895 ICJ54_RS00235 WP_189121430.1 63231..64229(-) (pilT) [Pseudomonas asiatica strain C1]
MDVTDLLARAVDAGASDLHLAAGQLPMLRLDGELQRMALPTLGPATLTKGMAPLLDEDQRRQWAQGDELDLALELPALGR
FRLNLFRQLHGPAATFRLIPGHIATLDELDLVDVFQAVAQCRDGLILVGGPTGCGKSSTLAALLDQLNRDRALHIITLED
PVEVIHSSQRSLVNQREVGRHCGGLAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHTRSAVSSVDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRRAGGGRVAAREVLVVTPAVRNLVREGRMAQLCSVMQAGGADGMRTMEGAM
RGLKERGLISDL
MDVTDLLARAVDAGASDLHLAAGQLPMLRLDGELQRMALPTLGPATLTKGMAPLLDEDQRRQWAQGDELDLALELPALGR
FRLNLFRQLHGPAATFRLIPGHIATLDELDLVDVFQAVAQCRDGLILVGGPTGCGKSSTLAALLDQLNRDRALHIITLED
PVEVIHSSQRSLVNQREVGRHCGGLAQGLRSALRQDPDVIMIGELRDLETIRLALRAAETGHLVLATVHTRSAVSSVDRL
VEVFAAEEKPLVRAMLAESLRLVVAQVLVRRAGGGRVAAREVLVVTPAVRNLVREGRMAQLCSVMQAGGADGMRTMEGAM
RGLKERGLISDL
Nucleotide
Download Length: 999 bp
>NTDB_id=481895 ICJ54_RS00235 WP_189121430.1 63231..64229(-) (pilT) [Pseudomonas asiatica strain C1]
ATGGATGTGACCGACCTGTTGGCCCGGGCCGTGGATGCGGGGGCTTCCGACCTGCACCTGGCGGCGGGCCAGTTACCGAT
GTTGCGCCTGGATGGCGAGCTGCAGCGCATGGCCCTGCCGACCTTGGGCCCGGCGACCTTGACCAAGGGCATGGCACCCT
TGCTGGATGAAGACCAGCGCCGACAGTGGGCCCAGGGTGATGAGCTGGACCTGGCGCTGGAATTGCCGGCGCTAGGGCGC
TTTCGGCTGAATCTGTTTCGCCAGTTGCACGGCCCTGCGGCCACCTTTCGCCTGATCCCGGGGCATATAGCCACGCTCGA
TGAACTCGACCTGGTCGATGTGTTTCAAGCTGTTGCGCAGTGCCGAGATGGCTTGATCCTCGTCGGTGGGCCGACCGGCT
GTGGCAAGTCCAGCACCTTGGCGGCACTGCTCGACCAGCTGAACCGCGATCGTGCTCTGCATATCATCACCCTTGAGGAC
CCTGTCGAAGTTATCCACAGCAGCCAGCGCAGCCTGGTCAACCAGCGTGAGGTCGGCCGCCATTGCGGTGGGCTTGCCCA
GGGGCTGCGCAGTGCCCTGCGCCAGGACCCGGATGTGATCATGATCGGTGAGCTGCGCGACCTGGAAACCATTCGCCTGG
CCTTGCGTGCGGCTGAGACCGGGCACCTGGTACTGGCGACCGTGCATACCCGTTCGGCGGTGAGCAGTGTTGACCGGTTG
GTGGAGGTGTTCGCTGCCGAAGAGAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGTTGCGCCTGGTGGTAGCGCAGGT
GCTGGTCAGGCGCGCGGGCGGAGGGCGGGTTGCTGCGCGGGAAGTGCTGGTGGTGACGCCAGCGGTGCGTAACCTGGTTC
GGGAAGGGCGAATGGCGCAGTTGTGTTCGGTGATGCAGGCGGGTGGTGCGGACGGGATGCGGACGATGGAGGGGGCGATG
CGAGGGTTGAAGGAGAGGGGGCTGATCAGCGATCTATAG
ATGGATGTGACCGACCTGTTGGCCCGGGCCGTGGATGCGGGGGCTTCCGACCTGCACCTGGCGGCGGGCCAGTTACCGAT
GTTGCGCCTGGATGGCGAGCTGCAGCGCATGGCCCTGCCGACCTTGGGCCCGGCGACCTTGACCAAGGGCATGGCACCCT
TGCTGGATGAAGACCAGCGCCGACAGTGGGCCCAGGGTGATGAGCTGGACCTGGCGCTGGAATTGCCGGCGCTAGGGCGC
TTTCGGCTGAATCTGTTTCGCCAGTTGCACGGCCCTGCGGCCACCTTTCGCCTGATCCCGGGGCATATAGCCACGCTCGA
TGAACTCGACCTGGTCGATGTGTTTCAAGCTGTTGCGCAGTGCCGAGATGGCTTGATCCTCGTCGGTGGGCCGACCGGCT
GTGGCAAGTCCAGCACCTTGGCGGCACTGCTCGACCAGCTGAACCGCGATCGTGCTCTGCATATCATCACCCTTGAGGAC
CCTGTCGAAGTTATCCACAGCAGCCAGCGCAGCCTGGTCAACCAGCGTGAGGTCGGCCGCCATTGCGGTGGGCTTGCCCA
GGGGCTGCGCAGTGCCCTGCGCCAGGACCCGGATGTGATCATGATCGGTGAGCTGCGCGACCTGGAAACCATTCGCCTGG
CCTTGCGTGCGGCTGAGACCGGGCACCTGGTACTGGCGACCGTGCATACCCGTTCGGCGGTGAGCAGTGTTGACCGGTTG
GTGGAGGTGTTCGCTGCCGAAGAGAAGCCGTTGGTGCGGGCGATGCTGGCCGAGTCGTTGCGCCTGGTGGTAGCGCAGGT
GCTGGTCAGGCGCGCGGGCGGAGGGCGGGTTGCTGCGCGGGAAGTGCTGGTGGTGACGCCAGCGGTGCGTAACCTGGTTC
GGGAAGGGCGAATGGCGCAGTTGTGTTCGGTGATGCAGGCGGGTGGTGCGGACGGGATGCGGACGATGGAGGGGGCGATG
CGAGGGTTGAAGGAGAGGGGGCTGATCAGCGATCTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
51.515 |
99.398 |
0.512 |
| pilT | Acinetobacter nosocomialis M2 |
50.606 |
99.398 |
0.503 |
| pilT | Acinetobacter baumannii D1279779 |
50.606 |
99.398 |
0.503 |
| pilT | Acinetobacter baumannii strain A118 |
50.606 |
99.398 |
0.503 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.303 |
99.398 |
0.5 |
| pilT | Acinetobacter baylyi ADP1 |
50 |
99.398 |
0.497 |
| pilT | Vibrio cholerae strain A1552 |
48.936 |
99.096 |
0.485 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.936 |
99.096 |
0.485 |
| pilT | Legionella pneumophila strain Lp02 |
48.485 |
99.398 |
0.482 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.485 |
99.398 |
0.482 |
| pilT | Neisseria meningitidis 8013 |
48.338 |
99.699 |
0.482 |
| pilT | Neisseria gonorrhoeae MS11 |
48.036 |
99.699 |
0.479 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.317 |
99.699 |
0.452 |
| pilU | Pseudomonas stutzeri DSM 10701 |
36.858 |
99.699 |
0.367 |