Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JRY11_RS12585 Genome accession   NZ_CP070382
Coordinates   1890769..1891074 (+) Length   101 a.a.
NCBI ID   WP_023189241.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1885769..1896074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS09790 (JRY11_001969) - 1886259..1886738 (+) 480 WP_023189234.1 nucleoside 2-deoxyribosyltransferase -
  JRY11_RS09795 (JRY11_001970) - 1886803..1887855 (+) 1053 WP_023189235.1 BMP family protein -
  JRY11_RS09800 (JRY11_001971) - 1888035..1888958 (+) 924 WP_023189236.1 FAD:protein FMN transferase -
  JRY11_RS09805 (JRY11_001972) - 1888974..1890185 (+) 1212 WP_248554243.1 NAD(P)H-dependent oxidoreductase -
  JRY11_RS12580 recA 1890561..1890695 (+) 135 WP_023189240.1 RecA protein Machinery gene
  JRY11_RS12585 (JRY11_001973) recA 1890769..1891074 (+) 306 WP_023189241.1 RecA protein Machinery gene
  JRY11_RS12650 recA 1891098..1891250 (+) 153 WP_332297123.1 hypothetical protein Machinery gene
  JRY11_RS09815 (JRY11_001974) - 1891510..1892001 (+) 492 WP_023189242.1 MarR family transcriptional regulator -
  JRY11_RS09820 (JRY11_001975) - 1891998..1892789 (+) 792 WP_025017078.1 hypothetical protein -
  JRY11_RS09825 (JRY11_001976) - 1893269..1893670 (-) 402 WP_023189244.1 MerR family transcriptional regulator -
  JRY11_RS09830 (JRY11_001977) - 1893886..1894359 (+) 474 WP_025017077.1 flavodoxin family protein -
  JRY11_RS09835 (JRY11_001978) - 1894376..1895233 (+) 858 WP_023189246.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11250.33 Da        Isoelectric Point: 10.8133

>NTDB_id=474189 JRY11_RS12585 WP_023189241.1 1890769..1891074(+) (recA) [Lactococcus lactis strain KF140]
MSEQLSKLLSKVNQTKTVIIFINQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKQVFTLLKTR
CQHLIKSQLLSMSLGMDSLKK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=474189 JRY11_RS12585 WP_023189241.1 1890769..1891074(+) (recA) [Lactococcus lactis strain KF140]
GTGTCAGAACAACTCTCTAAGCTCCTTTCAAAAGTCAATCAGACTAAGACGGTCATTATCTTCATCAATCAAGTGCGTTC
AACCATGAGTGGACTATTCTTAAATAAAGAAACCACTCCAGGAGGTTCAGCACTAAAATTTTATTCTTCTGTACGAATCG
AAGTTAAATCAGGAGAAAAAATCAAAGATGGAATTGATACTATCGGAAAAAAACAAGTCTTCACATTGTTAAAAACAAGG
TGTCAGCACCTTATAAAAAGCCAACTGTTATCAATGTCTTTAGGGATGGATTCTCTCAAGAAATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(1-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

41.414

98.02

0.406
  recA Streptococcus mitis NCTC 12261

41.414

98.02

0.406
  recA Bacillus subtilis subsp. subtilis str. 168

50

79.208

0.396
  recA Lactococcus lactis subsp. cremoris KW2

40.404

98.02

0.396
  recA Streptococcus mutans UA159

40.404

98.02

0.396
  recA Streptococcus pneumoniae D39

39.394

98.02

0.386
  recA Streptococcus pneumoniae R6

39.394

98.02

0.386
  recA Streptococcus pneumoniae TIGR4

39.394

98.02

0.386
  recA Streptococcus thermophilus LMD-9

39.394

98.02

0.386
  recA Streptococcus thermophilus LMG 18311

39.394

98.02

0.386
  recA Streptococcus pneumoniae R36A

39.394

98.02

0.386
  recA Streptococcus pneumoniae Rx1

39.394

98.02

0.386
  recA Latilactobacillus sakei subsp. sakei 23K

48.75

79.208

0.386
  recA Streptococcus pyogenes NZ131

45.238

83.168

0.376
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.583

95.05

0.376