Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JRY11_RS12645 Genome accession   NZ_CP070382
Coordinates   1884390..1884587 (+) Length   65 a.a.
NCBI ID   WP_255209170.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879390..1889587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS09760 (JRY11_001963) glpK 1879598..1881094 (+) 1497 WP_023189229.1 glycerol kinase GlpK -
  JRY11_RS09765 (JRY11_001964) glpO 1881131..1882960 (+) 1830 WP_044009675.1 type 1 glycerol-3-phosphate oxidase -
  JRY11_RS09770 (JRY11_001965) - 1883012..1883749 (+) 738 WP_004257908.1 MIP/aquaporin family protein -
  JRY11_RS12640 (JRY11_001966) recA 1884049..1884252 (+) 204 WP_250645389.1 DNA recombination/repair protein RecA Machinery gene
  JRY11_RS12645 recA 1884390..1884587 (+) 198 WP_255209170.1 DNA recombination/repair protein RecA Machinery gene
  JRY11_RS09780 (JRY11_001967) - 1885068..1885718 (+) 651 WP_023189232.1 deoxynucleoside kinase -
  JRY11_RS09785 (JRY11_001968) - 1885721..1886275 (+) 555 WP_023189233.1 TIGR00730 family Rossman fold protein -
  JRY11_RS09790 (JRY11_001969) - 1886259..1886738 (+) 480 WP_023189234.1 nucleoside 2-deoxyribosyltransferase -
  JRY11_RS09795 (JRY11_001970) - 1886803..1887855 (+) 1053 WP_023189235.1 BMP family protein -
  JRY11_RS09800 (JRY11_001971) - 1888035..1888958 (+) 924 WP_023189236.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7233.43 Da        Isoelectric Point: 9.9678

>NTDB_id=474191 JRY11_RS12645 WP_255209170.1 1884390..1884587(+) (recA) [Lactococcus lactis strain KF140]
MKDGIDTIGKKTTLHTVKNKVSAPYKKPTVINVFGDGFSQEIDVVTLAIQMGVLKKMNEWYSFNG

Nucleotide


Download         Length: 198 bp        

>NTDB_id=474191 JRY11_RS12645 WP_255209170.1 1884390..1884587(+) (recA) [Lactococcus lactis strain KF140]
ATCAAAGATGGCATTGATACTATCGGTAAGAAAACCACGCTTCATACCGTTAAAAATAAGGTATCAGCTCCATATAAAAA
GCCAACTGTTATTAATGTATTTGGAGATGGATTCTCTCAAGAAATAGACGTGGTCACATTAGCGATTCAAATGGGTGTGC
TTAAGAAGATGAACGAATGGTACTCGTTTAATGGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.935

95.385

0.4
  recA Streptococcus mutans UA159

41.379

89.231

0.369