Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HP062_RS15820 | Genome accession | NZ_CP053929 |
| Coordinates | 3464479..3464886 (-) | Length | 135 a.a. |
| NCBI ID | WP_172791653.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. B14-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3459479..3469886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP062_RS15805 (HP062_15805) | - | 3460278..3463232 (+) | 2955 | WP_172791652.1 | DUF748 domain-containing protein | - |
| HP062_RS15810 (HP062_15810) | - | 3463232..3463528 (+) | 297 | WP_154501766.1 | DUF2845 domain-containing protein | - |
| HP062_RS15815 (HP062_15815) | - | 3463814..3464167 (-) | 354 | WP_010467586.1 | BON domain-containing protein | - |
| HP062_RS15820 (HP062_15820) | pilA | 3464479..3464886 (-) | 408 | WP_172791653.1 | pilin | Machinery gene |
| HP062_RS15825 (HP062_15825) | pilB | 3465112..3466812 (+) | 1701 | WP_172791654.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HP062_RS15830 (HP062_15830) | pilC | 3466815..3468032 (+) | 1218 | WP_010467583.1 | type II secretion system F family protein | Machinery gene |
| HP062_RS15835 (HP062_15835) | pilD | 3468034..3468906 (+) | 873 | WP_172791655.1 | A24 family peptidase | Machinery gene |
| HP062_RS15840 (HP062_15840) | coaE | 3468903..3469526 (+) | 624 | WP_042932554.1 | dephospho-CoA kinase | - |
| HP062_RS15845 (HP062_15845) | yacG | 3469523..3469723 (+) | 201 | WP_077750267.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13770.94 Da Isoelectric Point: 8.1079
>NTDB_id=449070 HP062_RS15820 WP_172791653.1 3464479..3464886(-) (pilA) [Pseudomonas sp. B14-6]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWACTTTVAQEYAPKGCTGV
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWACTTTVAQEYAPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=449070 HP062_RS15820 WP_172791653.1 3464479..3464886(-) (pilA) [Pseudomonas sp. B14-6]
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGGCTTGCACCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTCAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGGCTTGCACCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
49.275 |
100 |
0.504 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
46.715 |
100 |
0.474 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.657 |
100 |
0.452 |
| pilA | Vibrio cholerae strain A1552 |
42.657 |
100 |
0.452 |
| pilA | Vibrio cholerae C6706 |
42.657 |
100 |
0.452 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.444 |
100 |
0.444 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
36.054 |
100 |
0.393 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.879 |
100 |
0.385 |
| pilA2 | Legionella pneumophila str. Paris |
37.778 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.037 |
100 |
0.37 |