Detailed information NTG0449073

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HP062_RS15835
• Genome accession: NZ_CP053929
• Coordinates: 3468034..3468906 (+)
• Length: 290 a.a.
• NCBI ID: WP_172791655.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B14-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3463034..3473906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP062_RS15810 (HP062_15810)	-	3463232..3463528 (+)	297	WP_154501766.1	DUF2845 domain-containing protein	-
HP062_RS15815 (HP062_15815)	-	3463814..3464167 (-)	354	WP_010467586.1	BON domain-containing protein	-
HP062_RS15820 (HP062_15820)	pilA	3464479..3464886 (-)	408	WP_172791653.1	pilin	Machinery gene
HP062_RS15825 (HP062_15825)	pilB	3465112..3466812 (+)	1701	WP_172791654.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HP062_RS15830 (HP062_15830)	pilC	3466815..3468032 (+)	1218	WP_010467583.1	type II secretion system F family protein	Machinery gene
HP062_RS15835 (HP062_15835)	pilD	3468034..3468906 (+)	873	WP_172791655.1	A24 family peptidase	Machinery gene
HP062_RS15840 (HP062_15840)	coaE	3468903..3469526 (+)	624	WP_042932554.1	dephospho-CoA kinase	-
HP062_RS15845 (HP062_15845)	yacG	3469523..3469723 (+)	201	WP_077750267.1	DNA gyrase inhibitor YacG	-
HP062_RS15850 (HP062_15850)	-	3469727..3469942 (-)	216	WP_172791656.1	hypothetical protein	-
HP062_RS15855 (HP062_15855)	-	3470006..3470695 (-)	690	WP_083375730.1	energy-coupling factor ABC transporter permease	-
HP062_RS15860 (HP062_15860)	-	3470692..3471159 (-)	468	WP_172791657.1	FAD/FMN-containing dehydrogenase	-
HP062_RS15865 (HP062_15865)	-	3471288..3471914 (+)	627	WP_007970534.1	DUF1780 domain-containing protein	-
HP062_RS15870 (HP062_15870)	-	3471911..3472438 (+)	528	WP_010467568.1	MOSC domain-containing protein	-
HP062_RS15875 (HP062_15875)	-	3472490..3472663 (+)	174	WP_008028730.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32161.48 Da
• Isoelectric Point: 8.2577

>NTDB_id=449073 HP062_RS15835 WP_172791655.1 3468034..3468906(+) (pilD) [Pseudomonas sp. B14-6]
MPLNEVLILYPLVFVAIALAVGLLVGSFLNVVVWRLPKMLQREWRLQAHDVLGFPPEAPGTAYNLMLPHSHCPQCDHRIR
AWENIPLLSYLFLRGRCSNCAAPISKRYPLTELACGLLSGFIAWHFGFGWQACMVLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHEALWGAVAGYMTLWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNAQTSTPIPFGPFLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=449073 HP062_RS15835 WP_172791655.1 3468034..3468906(+) (pilD) [Pseudomonas sp. B14-6]
ATGCCCTTGAACGAAGTCCTGATCCTCTATCCGCTGGTGTTCGTGGCCATCGCCTTGGCAGTCGGCCTGCTGGTAGGCAG
TTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCCAACGCGAATGGCGGCTTCAAGCCCATGACGTGTTGGGTT
TTCCGCCCGAGGCACCGGGCACCGCCTACAACTTGATGCTGCCTCATTCCCACTGCCCGCAGTGCGACCATCGAATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATCTGTTTTTACGGGGTCGATGCTCGAACTGCGCCGCGCCAATCAGCAAACG
TTATCCGCTGACTGAACTGGCCTGCGGTCTGCTCTCGGGGTTTATCGCCTGGCATTTCGGCTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGTCTGATCGACGCCGAGCATCAACTGTTGCCGGATGTGCTGGTA
CTGCCACTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCACTGCATGAGGCATTGTGGGGCGCAGT
GGCCGGTTATATGACCTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGTTACTGGCCCTGCTCGGGGCCTGGGGCGGTTGGCAGATATTGCCGTTGACCATTCTGCTGTCATCGCTCGTGGGG
GCCATCATCGGGGTGATTTTGCTGCGACTGCGCAACGCGCAAACCTCGACTCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.482	97.241	0.51
pilD	Acinetobacter baumannii D1279779	50	94.483	0.472
pilD	Acinetobacter nosocomialis M2	50	94.483	0.472
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445