Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HP062_RS15935 Genome accession   NZ_CP053929
Coordinates   3481513..3483102 (+) Length   529 a.a.
NCBI ID   WP_172792585.1    Uniprot ID   -
Organism   Pseudomonas sp. B14-6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3476513..3488102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP062_RS15915 (HP062_15915) pgeF 3478324..3479043 (-) 720 WP_172791658.1 peptidoglycan editing factor PgeF -
  HP062_RS15920 (HP062_15920) rluD 3479040..3480002 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HP062_RS15925 (HP062_15925) - 3480154..3481176 (+) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  HP062_RS15930 (HP062_15930) - 3481290..3481523 (+) 234 WP_094470587.1 PP0621 family protein -
  HP062_RS15935 (HP062_15935) pilS 3481513..3483102 (+) 1590 WP_172792585.1 PAS domain-containing sensor histidine kinase Regulator
  HP062_RS15940 (HP062_15940) pilR 3483105..3484445 (+) 1341 WP_010467552.1 sigma-54 dependent transcriptional regulator Regulator
  HP062_RS15945 (HP062_15945) thiO 3484575..3485675 (-) 1101 WP_172791659.1 glycine oxidase ThiO -
  HP062_RS15950 (HP062_15950) - 3485734..3486135 (-) 402 WP_077749389.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58468.29 Da        Isoelectric Point: 7.0404

>NTDB_id=449074 HP062_RS15935 WP_172792585.1 3481513..3483102(+) (pilS) [Pseudomonas sp. B14-6]
MVAETSTPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAQDDLLRSGSWLYLVLNILLVVFWQNTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGLGFLLSFSHPISPGEYLQVGTLG
ALCFAAALLVQGLIRRLEVSENLAEQRASEVLGLEALNALILHRMRTGILVLDDQRRVRLANQSALTLLGQNDLDGQLID
DYSPALVERLQLWFNNPSLRPQSLKIASSGIELQPSFIALDQSPNHHTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGATDR
QLIHLHIGPGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDLAQAWLELFVEPNSQLPTLEVRDNGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=449074 HP062_RS15935 WP_172792585.1 3481513..3483102(+) (pilS) [Pseudomonas sp. B14-6]
GTGGTCGCTGAGACGTCCACTCCCGGCGGCAAACAGGCACAGCGACTGCTGCGTCTTTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTCGTACTGTTGATTTCCAGCAACATGGACAACCAGCTGCTGGCCTTCGCCCAGGATGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTCTTTTGGCAGAACACCCGACGGCCGGCGCAGCTTTTC
AGCCTCGCATTGGTCGATGTCCTTCTGCTGTGCGGTCTGTTCTATGCCGCGGGCGGTGTGGCCAGCGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCAGCAACACCCTGTTGCGCGGGCGTATCGGCTTGTTGATCGCGGCGGTCGCCGCCCTTG
GCATCGTCGGCCTTGGCTTCCTCCTGAGTTTCAGTCACCCGATCAGTCCCGGCGAGTACCTGCAAGTCGGCACTCTCGGC
GCGCTGTGTTTTGCCGCGGCGTTGCTCGTGCAAGGTCTGATCAGGCGACTGGAAGTCAGCGAAAACCTCGCCGAACAGCG
AGCCAGTGAAGTGCTTGGCCTGGAAGCGCTCAATGCGCTGATCCTGCACCGCATGCGCACGGGCATTCTGGTGCTGGACG
ACCAGCGGCGGGTGCGACTGGCCAATCAAAGCGCCTTGACCTTACTGGGGCAGAACGACCTCGATGGTCAGCTGATCGAC
GACTATTCGCCGGCCTTGGTCGAACGCCTTCAGCTGTGGTTCAACAATCCATCGCTGCGACCGCAAAGCCTGAAAATCGC
CAGCAGTGGCATAGAACTGCAACCCAGCTTCATTGCGTTGGACCAAAGCCCGAACCACCACACCCTGGTATTTCTGGAGG
ACCTCGCCCAGATCGCTCAACAAGCGCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACGGCGGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAAC
AAACCGTACCGCAACGGCTCGATCTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGTGAAGGCGCGACCGATCGC
CAGTTGATTCACCTGCACATCGGCCCAGGCGACTTCAAAACCCTGATGGACCCGAATCAGCTGACTCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTGAATCACGACCTGGCGCAGGCCTGGCTCGAGTTGTTTGTCGAGCCCA
ACAGCCAGTTGCCGACGCTCGAAGTCCGGGACAACGGCCCCGGCGTGGCGCCGGACCAACAGACGCATTTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGTACAGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

PAS domain (PAS_8)

(201-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605