Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HP062_RS15940 Genome accession   NZ_CP053929
Coordinates   3483105..3484445 (+) Length   446 a.a.
NCBI ID   WP_010467552.1    Uniprot ID   A0A024EFS0
Organism   Pseudomonas sp. B14-6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478105..3489445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP062_RS15915 (HP062_15915) pgeF 3478324..3479043 (-) 720 WP_172791658.1 peptidoglycan editing factor PgeF -
  HP062_RS15920 (HP062_15920) rluD 3479040..3480002 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HP062_RS15925 (HP062_15925) - 3480154..3481176 (+) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  HP062_RS15930 (HP062_15930) - 3481290..3481523 (+) 234 WP_094470587.1 PP0621 family protein -
  HP062_RS15935 (HP062_15935) pilS 3481513..3483102 (+) 1590 WP_172792585.1 PAS domain-containing sensor histidine kinase Regulator
  HP062_RS15940 (HP062_15940) pilR 3483105..3484445 (+) 1341 WP_010467552.1 sigma-54 dependent transcriptional regulator Regulator
  HP062_RS15945 (HP062_15945) thiO 3484575..3485675 (-) 1101 WP_172791659.1 glycine oxidase ThiO -
  HP062_RS15950 (HP062_15950) - 3485734..3486135 (-) 402 WP_077749389.1 type IV pilin protein -
  HP062_RS15955 (HP062_15955) - 3486150..3489260 (-) 3111 WP_172791660.1 pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49813.28 Da        Isoelectric Point: 6.4102

>NTDB_id=449075 HP062_RS15940 WP_010467552.1 3483105..3484445(+) (pilR) [Pseudomonas sp. B14-6]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLMRETFDLCLTDMRLPDGTGLELVQYIQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEMVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASH
VLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCEDKQIEASDLRLAEGNCTAESGVPDLTQIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=449075 HP062_RS15940 WP_010467552.1 3483105..3484445(+) (pilR) [Pseudomonas sp. B14-6]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTACTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAAGCCTTGTTGATGCGCGAGACATTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGTTGGTGCAGTACATCCAGCAACGTTACCCACACGTGCCGGTGGCG
ATGATCACCGCTTACGGCAGCCTCGAAACAGCGATCAACGCCCTCAAGGCAGGGGCTTTCGACTTCCTGACCAAGCCGGT
TGACCTGACGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCGGCACCGGGTGGCGCCAGTACCGCCATCGATC
GCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCACGCAGTCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCCCGACTGATCCACGAGCAGGGCCCGCGGGCTAATCAACC
GTTCGTCCCGGTCAATTGCGGGGCAATTCCGTCAGAGTTGATGGAGAGTGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCAGGGCTGTTCCAGGCCGCCCACGGCGGCACACTGTTTCTCGACGAAGTGGCCGATCTG
CCCTTGGCGATGCAGGTCAAACTGCTCCGAGCCATTCAGGAGAAAGCCATTCGCAGTGTCGGCGGTCAGCAAGAAATGGT
GGTTGATGTCCGCATCCTTTGTGCCACCCACAAAGACCTCGATGCCGAAGTCACCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTGCGCGTCCCCCCTTTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCCAGCCAT
GTGCTCAAGCGCCTGGCGGCCGGCAGCGGTCAACCCGCCGCAAAACTCCATCCACTCGCCCTGGATGCGCTGAAAAGTTA
CCGTTTTCCGGGCAACGTACGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGTGAGGACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGTAACTGCACGGCAGAGAGCGGCGTGCCGGACCTGACGCAAATCGATAACCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCAGATCGATGCGATATCGGCTCAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EFS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

99.327

0.789
  pilR Acinetobacter baumannii strain A118

49.46

100

0.513