Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | HPC62_RS12830 | Genome accession | NZ_CP053661 |
| Coordinates | 3074373..3075503 (+) | Length | 376 a.a. |
| NCBI ID | WP_172356240.1 | Uniprot ID | - |
| Organism | Thermoleptolyngbya sichuanensis A183 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3069373..3080503
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPC62_RS12820 (HPC62_12830) | grpE | 3070794..3071489 (-) | 696 | WP_172356236.1 | nucleotide exchange factor GrpE | - |
| HPC62_RS12825 (HPC62_12835) | pilB/pilB1 | 3072264..3074267 (+) | 2004 | WP_172356238.1 | GspE/PulE family protein | Machinery gene |
| HPC62_RS12830 (HPC62_12840) | pilT | 3074373..3075503 (+) | 1131 | WP_172356240.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| HPC62_RS12835 (HPC62_12845) | - | 3075929..3077164 (+) | 1236 | WP_172356242.1 | type II secretion system F family protein | - |
| HPC62_RS12840 (HPC62_12850) | - | 3077314..3077919 (+) | 606 | WP_172356244.1 | hypothetical protein | - |
| HPC62_RS12845 (HPC62_12855) | - | 3077972..3078559 (-) | 588 | WP_172356246.1 | hypothetical protein | - |
| HPC62_RS12850 (HPC62_12860) | - | 3078580..3079017 (-) | 438 | WP_172356248.1 | DUF4079 domain-containing protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41144.46 Da Isoelectric Point: 6.7592
>NTDB_id=446080 HPC62_RS12830 WP_172356240.1 3074373..3075503(+) (pilT) [Thermoleptolyngbya sichuanensis A183]
MELMIEDLMEQLIEMGGSDMHLSAGLPPYFRINGHLAPINDEPMTSEQCQRLIFSMLNNTQRKNLEQNWELDCSYGVKGL
ARFRVNVYKDRGTYAACLRALSSKIPSFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAIIDLINRTRAEHILTV
EDPIEFVYEPVKSLIHQRQLGEDTKSFANALKAALREDPDVILVGEMRDLETISLAISAAETGHLVMGTLHTSSASQTVD
RMIDVFPAERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEFGRAMAQEIMVVTPAIANLIREGKTAQIYSAIQTGGKLGM
VTLEKVLADLYKAGTISFESAMSKTSRPDELQRLIGGAMQQPAPGGARPGAPVGTR
MELMIEDLMEQLIEMGGSDMHLSAGLPPYFRINGHLAPINDEPMTSEQCQRLIFSMLNNTQRKNLEQNWELDCSYGVKGL
ARFRVNVYKDRGTYAACLRALSSKIPSFEKLGLPDVVREMAEKPRGLILVTGPTGSGKTTTLAAIIDLINRTRAEHILTV
EDPIEFVYEPVKSLIHQRQLGEDTKSFANALKAALREDPDVILVGEMRDLETISLAISAAETGHLVMGTLHTSSASQTVD
RMIDVFPAERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEFGRAMAQEIMVVTPAIANLIREGKTAQIYSAIQTGGKLGM
VTLEKVLADLYKAGTISFESAMSKTSRPDELQRLIGGAMQQPAPGGARPGAPVGTR
Nucleotide
Download Length: 1131 bp
>NTDB_id=446080 HPC62_RS12830 WP_172356240.1 3074373..3075503(+) (pilT) [Thermoleptolyngbya sichuanensis A183]
ATGGAATTGATGATCGAAGACTTGATGGAGCAACTGATTGAGATGGGCGGGTCGGATATGCACCTGTCGGCTGGATTGCC
GCCCTACTTCCGCATCAATGGCCACCTCGCCCCCATCAACGACGAGCCGATGACCTCGGAGCAATGCCAGCGGCTGATCT
TCAGTATGCTTAACAACACCCAGCGAAAGAACCTGGAGCAAAACTGGGAACTGGACTGCTCCTACGGTGTGAAAGGTCTG
GCCCGCTTCCGGGTGAACGTGTACAAAGATCGGGGCACCTACGCCGCCTGTTTGCGGGCGCTGAGTTCCAAAATTCCTAG
CTTCGAGAAGCTAGGTCTGCCGGACGTGGTGCGCGAAATGGCGGAAAAGCCCAGAGGACTGATCCTGGTGACGGGGCCGA
CGGGTTCCGGAAAAACCACGACGCTGGCGGCCATCATCGACCTGATCAACCGCACCCGTGCAGAACACATTCTGACTGTG
GAAGACCCCATTGAATTTGTCTATGAACCTGTTAAAAGCTTGATCCACCAGCGGCAGCTTGGGGAAGACACCAAGAGCTT
TGCAAACGCGCTGAAGGCGGCTCTACGGGAAGACCCAGACGTGATTCTGGTGGGCGAGATGCGGGACCTGGAGACGATTT
CACTGGCGATCTCGGCGGCCGAAACTGGACACCTCGTGATGGGAACACTGCATACCAGTTCTGCTTCCCAGACCGTTGAC
CGGATGATCGACGTGTTCCCGGCTGAGCGTCAACAGCAGGTGCGGGTGCAGCTTTCCAACTCGCTGGTGGCAGTGTTTAG
CCAAACGCTGGTGCCTAAGAAGAATCCGAAGCCCGGTGAATTTGGGCGAGCGATGGCACAGGAAATCATGGTCGTTACTC
CGGCGATCGCCAACCTGATTCGCGAAGGCAAAACCGCCCAAATCTATTCCGCTATTCAAACGGGCGGCAAACTGGGCATG
GTCACGCTGGAGAAGGTGCTGGCTGACCTATACAAAGCGGGCACAATCTCGTTTGAATCGGCTATGTCGAAAACCTCTCG
CCCCGACGAACTCCAGCGGCTGATCGGCGGCGCAATGCAGCAACCCGCGCCGGGTGGTGCGCGTCCGGGTGCGCCCGTGG
GCACTCGATAG
ATGGAATTGATGATCGAAGACTTGATGGAGCAACTGATTGAGATGGGCGGGTCGGATATGCACCTGTCGGCTGGATTGCC
GCCCTACTTCCGCATCAATGGCCACCTCGCCCCCATCAACGACGAGCCGATGACCTCGGAGCAATGCCAGCGGCTGATCT
TCAGTATGCTTAACAACACCCAGCGAAAGAACCTGGAGCAAAACTGGGAACTGGACTGCTCCTACGGTGTGAAAGGTCTG
GCCCGCTTCCGGGTGAACGTGTACAAAGATCGGGGCACCTACGCCGCCTGTTTGCGGGCGCTGAGTTCCAAAATTCCTAG
CTTCGAGAAGCTAGGTCTGCCGGACGTGGTGCGCGAAATGGCGGAAAAGCCCAGAGGACTGATCCTGGTGACGGGGCCGA
CGGGTTCCGGAAAAACCACGACGCTGGCGGCCATCATCGACCTGATCAACCGCACCCGTGCAGAACACATTCTGACTGTG
GAAGACCCCATTGAATTTGTCTATGAACCTGTTAAAAGCTTGATCCACCAGCGGCAGCTTGGGGAAGACACCAAGAGCTT
TGCAAACGCGCTGAAGGCGGCTCTACGGGAAGACCCAGACGTGATTCTGGTGGGCGAGATGCGGGACCTGGAGACGATTT
CACTGGCGATCTCGGCGGCCGAAACTGGACACCTCGTGATGGGAACACTGCATACCAGTTCTGCTTCCCAGACCGTTGAC
CGGATGATCGACGTGTTCCCGGCTGAGCGTCAACAGCAGGTGCGGGTGCAGCTTTCCAACTCGCTGGTGGCAGTGTTTAG
CCAAACGCTGGTGCCTAAGAAGAATCCGAAGCCCGGTGAATTTGGGCGAGCGATGGCACAGGAAATCATGGTCGTTACTC
CGGCGATCGCCAACCTGATTCGCGAAGGCAAAACCGCCCAAATCTATTCCGCTATTCAAACGGGCGGCAAACTGGGCATG
GTCACGCTGGAGAAGGTGCTGGCTGACCTATACAAAGCGGGCACAATCTCGTTTGAATCGGCTATGTCGAAAACCTCTCG
CCCCGACGAACTCCAGCGGCTGATCGGCGGCGCAATGCAGCAACCCGCGCCGGGTGGTGCGCGTCCGGGTGCGCCCGTGG
GCACTCGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.314 |
92.287 |
0.492 |
| pilT | Pseudomonas aeruginosa PAK |
53.314 |
92.287 |
0.492 |
| pilT | Legionella pneumophila strain Lp02 |
53.043 |
91.755 |
0.487 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.043 |
91.755 |
0.487 |
| pilT | Acinetobacter baylyi ADP1 |
52.45 |
92.287 |
0.484 |
| pilT | Acinetobacter baumannii strain A118 |
51.297 |
92.287 |
0.473 |
| pilT | Acinetobacter baumannii D1279779 |
51.297 |
92.287 |
0.473 |
| pilT | Acinetobacter nosocomialis M2 |
51.297 |
92.287 |
0.473 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.087 |
97.34 |
0.468 |
| pilT | Neisseria gonorrhoeae MS11 |
50.442 |
90.16 |
0.455 |
| pilT | Neisseria meningitidis 8013 |
50.442 |
90.16 |
0.455 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.118 |
90.426 |
0.444 |
| pilT | Vibrio cholerae strain A1552 |
49.118 |
90.426 |
0.444 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.601 |
93.351 |
0.37 |