Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | HKW97_RS04380 | Genome accession | NZ_CP053063 |
| Coordinates | 931371..931763 (+) | Length | 130 a.a. |
| NCBI ID | WP_407362915.1 | Uniprot ID | - |
| Organism | Pseudomonas luteola strain JZ42 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 926371..936763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKW97_RS04355 (HKW97_04335) | yacG | 926438..926641 (-) | 204 | WP_010797204.1 | DNA gyrase inhibitor YacG | - |
| HKW97_RS04360 (HKW97_04340) | coaE | 926634..927248 (-) | 615 | WP_407362913.1 | dephospho-CoA kinase | - |
| HKW97_RS04365 (HKW97_04345) | pilD | 927248..928117 (-) | 870 | WP_407362914.1 | prepilin peptidase | Machinery gene |
| HKW97_RS04370 (HKW97_04350) | pilC | 928117..929334 (-) | 1218 | WP_197872018.1 | type II secretion system F family protein | Machinery gene |
| HKW97_RS04375 (HKW97_04355) | pilB | 929466..931151 (-) | 1686 | WP_197872017.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HKW97_RS04380 (HKW97_04360) | pilA/pilAI | 931371..931763 (+) | 393 | WP_407362915.1 | pilin | Machinery gene |
| HKW97_RS04385 (HKW97_04365) | - | 931817..933544 (+) | 1728 | WP_407362916.1 | O-antigen ligase family protein | - |
| HKW97_RS04395 (HKW97_04375) | - | 934157..934555 (-) | 399 | WP_407362917.1 | hypothetical protein | - |
| HKW97_RS04400 (HKW97_04380) | - | 934554..935407 (+) | 854 | Protein_862 | IS5 family transposase | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13283.27 Da Isoelectric Point: 8.4866
>NTDB_id=442631 HKW97_RS04380 WP_407362915.1 931371..931763(+) (pilA/pilAI) [Pseudomonas luteola strain JZ42]
MKAQKGFTLIELMIVVAIIGILAAIALPAYSNYQARAKVAAGLAEISAGKTAYEQSVNEGVVPTAATDIGLQTTTGNCSI
TIAASGGLQCQLRNAPTQIASATITLARSSSGVWTCSSSVGDTYKPKTCQ
MKAQKGFTLIELMIVVAIIGILAAIALPAYSNYQARAKVAAGLAEISAGKTAYEQSVNEGVVPTAATDIGLQTTTGNCSI
TIAASGGLQCQLRNAPTQIASATITLARSSSGVWTCSSSVGDTYKPKTCQ
Nucleotide
Download Length: 393 bp
>NTDB_id=442631 HKW97_RS04380 WP_407362915.1 931371..931763(+) (pilA/pilAI) [Pseudomonas luteola strain JZ42]
ATGAAAGCTCAAAAAGGTTTTACTCTTATTGAATTGATGATCGTTGTAGCGATCATTGGTATTCTGGCGGCTATTGCTTT
ACCTGCTTATTCTAACTATCAAGCACGCGCTAAAGTTGCTGCTGGTTTAGCTGAGATTTCTGCAGGTAAAACTGCTTATG
AGCAGTCGGTAAACGAAGGGGTAGTTCCTACAGCAGCTACCGATATCGGTCTGCAGACAACGACAGGCAACTGTTCGATT
ACAATCGCAGCAAGCGGCGGGCTGCAGTGCCAACTTCGAAATGCTCCTACGCAAATTGCTTCCGCCACAATTACTTTGGC
CAGAAGCAGTAGCGGTGTTTGGACATGTAGTTCTTCAGTAGGCGATACTTACAAGCCCAAAACATGTCAATAA
ATGAAAGCTCAAAAAGGTTTTACTCTTATTGAATTGATGATCGTTGTAGCGATCATTGGTATTCTGGCGGCTATTGCTTT
ACCTGCTTATTCTAACTATCAAGCACGCGCTAAAGTTGCTGCTGGTTTAGCTGAGATTTCTGCAGGTAAAACTGCTTATG
AGCAGTCGGTAAACGAAGGGGTAGTTCCTACAGCAGCTACCGATATCGGTCTGCAGACAACGACAGGCAACTGTTCGATT
ACAATCGCAGCAAGCGGCGGGCTGCAGTGCCAACTTCGAAATGCTCCTACGCAAATTGCTTCCGCCACAATTACTTTGGC
CAGAAGCAGTAGCGGTGTTTGGACATGTAGTTCTTCAGTAGGCGATACTTACAAGCCCAAAACATGTCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50 |
100 |
0.531 |
| pilA | Acinetobacter baumannii strain A118 |
49.635 |
100 |
0.523 |
| pilA | Vibrio cholerae strain A1552 |
45.714 |
100 |
0.492 |
| pilA | Vibrio cholerae C6706 |
45.714 |
100 |
0.492 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.714 |
100 |
0.492 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
46.97 |
100 |
0.477 |
| comP | Acinetobacter baylyi ADP1 |
41.096 |
100 |
0.462 |
| pilA2 | Legionella pneumophila str. Paris |
41.727 |
100 |
0.446 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.727 |
100 |
0.446 |
| pilA | Pseudomonas aeruginosa PAK |
37.584 |
100 |
0.431 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40 |
92.308 |
0.369 |