Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PSF113_RS55810 | Genome accession | NC_016830 |
| Coordinates | 5807254..5807673 (-) | Length | 139 a.a. |
| NCBI ID | WP_014340250.1 | Uniprot ID | A0A161H4P9 |
| Organism | Pseudomonas ogarae | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5802254..5812673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSF113_RS55795 (PSF113_5000) | - | 5803075..5806008 (+) | 2934 | WP_014340248.1 | DUF748 domain-containing protein | - |
| PSF113_RS55800 (PSF113_5001) | - | 5806010..5806300 (+) | 291 | WP_014340249.1 | DUF2845 domain-containing protein | - |
| PSF113_RS55805 (PSF113_5002) | - | 5806629..5806982 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| PSF113_RS55810 (PSF113_5003) | pilA | 5807254..5807673 (-) | 420 | WP_014340250.1 | pilin | Machinery gene |
| PSF113_RS55815 (PSF113_5004) | pilB | 5807898..5809598 (+) | 1701 | WP_014340251.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSF113_RS55820 (PSF113_5005) | pilC | 5809601..5810818 (+) | 1218 | WP_014340252.1 | type II secretion system F family protein | Machinery gene |
| PSF113_RS55825 (PSF113_5006) | pilD | 5810820..5811689 (+) | 870 | WP_041476149.1 | A24 family peptidase | Machinery gene |
| PSF113_RS55830 (PSF113_5007) | coaE | 5811689..5812312 (+) | 624 | WP_041476150.1 | dephospho-CoA kinase | - |
| PSF113_RS55835 (PSF113_5008) | yacG | 5812309..5812509 (+) | 201 | WP_041476151.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 13958.02 Da Isoelectric Point: 7.5917
>NTDB_id=43749 PSF113_RS55810 WP_014340250.1 5807254..5807673(-) (pilA) [Pseudomonas ogarae]
MNKQSGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPSLANIGGTSPTSNCTLT
ASGTAADGAGTIACTLLNAPAPVLGKAITLTRSTQGVWTCGSTAAQEFLPAGCTGAANP
MNKQSGFTLIELLIVVAIIGILATFALPQYSKYQARAKATAGLAEVSALKVPFEDVMNQGTNPSLANIGGTSPTSNCTLT
ASGTAADGAGTIACTLLNAPAPVLGKAITLTRSTQGVWTCGSTAAQEFLPAGCTGAANP
Nucleotide
Download Length: 420 bp
>NTDB_id=43749 PSF113_RS55810 WP_014340250.1 5807254..5807673(-) (pilA) [Pseudomonas ogarae]
ATGAATAAGCAGAGTGGCTTTACCTTGATCGAACTGCTGATCGTCGTGGCGATCATCGGCATTCTGGCGACCTTTGCGTT
GCCGCAGTATTCCAAGTACCAGGCACGGGCCAAGGCGACGGCGGGGCTGGCGGAGGTCTCTGCATTGAAAGTGCCGTTTG
AAGACGTCATGAATCAGGGTACCAATCCATCGTTGGCCAACATCGGTGGGACTTCCCCCACCAGCAATTGCACCTTGACG
GCTTCAGGAACAGCAGCGGACGGAGCGGGCACTATCGCGTGTACCCTCTTGAACGCACCCGCTCCGGTACTTGGCAAAGC
AATCACCCTGACCCGTTCTACTCAAGGCGTTTGGACCTGCGGTTCGACCGCCGCTCAGGAATTCCTGCCGGCTGGTTGCA
CAGGTGCAGCGAATCCGTAA
ATGAATAAGCAGAGTGGCTTTACCTTGATCGAACTGCTGATCGTCGTGGCGATCATCGGCATTCTGGCGACCTTTGCGTT
GCCGCAGTATTCCAAGTACCAGGCACGGGCCAAGGCGACGGCGGGGCTGGCGGAGGTCTCTGCATTGAAAGTGCCGTTTG
AAGACGTCATGAATCAGGGTACCAATCCATCGTTGGCCAACATCGGTGGGACTTCCCCCACCAGCAATTGCACCTTGACG
GCTTCAGGAACAGCAGCGGACGGAGCGGGCACTATCGCGTGTACCCTCTTGAACGCACCCGCTCCGGTACTTGGCAAAGC
AATCACCCTGACCCGTTCTACTCAAGGCGTTTGGACCTGCGGTTCGACCGCCGCTCAGGAATTCCTGCCGGCTGGTTGCA
CAGGTGCAGCGAATCCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50 |
99.281 |
0.496 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.445 |
98.561 |
0.468 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.03 |
96.403 |
0.424 |
| pilA | Pseudomonas aeruginosa PAK |
38.411 |
100 |
0.417 |
| comP | Acinetobacter baylyi ADP1 |
37.748 |
100 |
0.41 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.194 |
100 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.406 |
99.281 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
38.406 |
99.281 |
0.381 |
| pilA | Vibrio cholerae C6706 |
36.301 |
100 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
36.301 |
100 |
0.381 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.301 |
100 |
0.381 |