Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSF113_RS55820 Genome accession   NC_016830
Coordinates   5809601..5810818 (+) Length   405 a.a.
NCBI ID   WP_014340252.1    Uniprot ID   -
Organism   Pseudomonas ogarae     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5804601..5815818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSF113_RS55800 (PSF113_5001) - 5806010..5806300 (+) 291 WP_014340249.1 DUF2845 domain-containing protein -
  PSF113_RS55805 (PSF113_5002) - 5806629..5806982 (-) 354 WP_003205664.1 BON domain-containing protein -
  PSF113_RS55810 (PSF113_5003) pilA 5807254..5807673 (-) 420 WP_014340250.1 pilin Machinery gene
  PSF113_RS55815 (PSF113_5004) pilB 5807898..5809598 (+) 1701 WP_014340251.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSF113_RS55820 (PSF113_5005) pilC 5809601..5810818 (+) 1218 WP_014340252.1 type II secretion system F family protein Machinery gene
  PSF113_RS55825 (PSF113_5006) pilD 5810820..5811689 (+) 870 WP_041476149.1 A24 family peptidase Machinery gene
  PSF113_RS55830 (PSF113_5007) coaE 5811689..5812312 (+) 624 WP_041476150.1 dephospho-CoA kinase -
  PSF113_RS55835 (PSF113_5008) yacG 5812309..5812509 (+) 201 WP_041476151.1 DNA gyrase inhibitor YacG -
  PSF113_RS55840 (PSF113_5009) - 5812506..5812721 (-) 216 WP_013694234.1 hypothetical protein -
  PSF113_RS55845 (PSF113_5010) - 5812785..5813471 (-) 687 WP_014340256.1 energy-coupling factor ABC transporter permease -
  PSF113_RS55850 (PSF113_5011) - 5813513..5813923 (-) 411 WP_014340257.1 tautomerase family protein -
  PSF113_RS55855 (PSF113_5012) - 5814075..5814974 (+) 900 WP_041476152.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44288.07 Da        Isoelectric Point: 10.0235

>NTDB_id=43751 PSF113_RS55820 WP_014340252.1 5809601..5810818(+) (pilC) [Pseudomonas ogarae]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINPQKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDQVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPMAVILVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQEWWWMLLGGLAGAFFGVK
YALKRSQAFRDWRDKWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=43751 PSF113_RS55820 WP_014340252.1 5809601..5810818(+) (pilC) [Pseudomonas ogarae]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTATACGTGGGAAGGCAAAGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGCCAGAGCCCCGCCCTGGTCAAGGCACAGCTGCGCAAACAAGGCATCAACCCGCAGAAGGTGCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGCTGGACATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCTGGCGTACCGCTGCTGCAAGCGTTCGACATCATCGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTTGACCA
GGTGAAGCAGGAAGTTGCCGCTGGCAACAGCTTCGCCGCCTCGCTGCGCAAGTGCCCGCAATATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGTGAGCAGGCCGGCGCCCTGGACACACTGCTGGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGATGGCGGTGATACTCGTCGCAGCGGTGGTCACCGGCAT
TCTGCTGGTCAAGGTGGTGCCACAGTTCGAATCGGTATTCTCCGGGTTCGGTGCGCAGCTGCCGGCCTTCACGGTGATGG
TCATCGGCCTGTCGGAATTCATGCAGGAGTGGTGGTGGATGCTGCTTGGCGGCTTGGCGGGGGCTTTTTTCGGGGTGAAA
TATGCCCTCAAGCGTTCCCAGGCGTTTCGTGACTGGCGAGACAAGTGGCTGCTCAAGCTCCCCTTGATAGGTACCTTGAT
GTACAAGTCTGCGGTGGCTCGCTATGCCCGCACGCTCTCGACGACATTCGCCGCAGGCGTGCCGCTGGTCGAAGCCCTCG
ATTCGGTATCGGGCGCCACCGGCAACGTGGTGTTCAAGCGTGCCGTGCAGCGCATCCGCCAGGATGTCTCGACCGGCATG
CAGTTGAATTTTTCCATGCGCGCCTCAGGGATCTTTCCGAACCTGGCGATCCAGATGACCGCCATCGGCGAGGAATCCGG
CGCGCTGGACGACATGCTCGACAAAGTGGCGAGCTTTTATGAGGCCGAGGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACTTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baylyi ADP1

59.799

98.272

0.588
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria gonorrhoeae MS11

43.035

99.259

0.427
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilG Neisseria meningitidis 44/76-A

42.537

99.259

0.422
  pilC Thermus thermophilus HB27

37.157

99.012

0.368

Multiple sequence alignment