Detailed information NTG0043752

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSF113_RS55825
• Genome accession: NC_016830
• Coordinates: 5810820..5811689 (+)
• Length: 289 a.a.
• NCBI ID: WP_041476149.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5805820..5816689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSF113_RS55800 (PSF113_5001)	-	5806010..5806300 (+)	291	WP_014340249.1	DUF2845 domain-containing protein	-
PSF113_RS55805 (PSF113_5002)	-	5806629..5806982 (-)	354	WP_003205664.1	BON domain-containing protein	-
PSF113_RS55810 (PSF113_5003)	pilA	5807254..5807673 (-)	420	WP_014340250.1	pilin	Machinery gene
PSF113_RS55815 (PSF113_5004)	pilB	5807898..5809598 (+)	1701	WP_014340251.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSF113_RS55820 (PSF113_5005)	pilC	5809601..5810818 (+)	1218	WP_014340252.1	type II secretion system F family protein	Machinery gene
PSF113_RS55825 (PSF113_5006)	pilD	5810820..5811689 (+)	870	WP_041476149.1	A24 family peptidase	Machinery gene
PSF113_RS55830 (PSF113_5007)	coaE	5811689..5812312 (+)	624	WP_041476150.1	dephospho-CoA kinase	-
PSF113_RS55835 (PSF113_5008)	yacG	5812309..5812509 (+)	201	WP_041476151.1	DNA gyrase inhibitor YacG	-
PSF113_RS55840 (PSF113_5009)	-	5812506..5812721 (-)	216	WP_013694234.1	hypothetical protein	-
PSF113_RS55845 (PSF113_5010)	-	5812785..5813471 (-)	687	WP_014340256.1	energy-coupling factor ABC transporter permease	-
PSF113_RS55850 (PSF113_5011)	-	5813513..5813923 (-)	411	WP_014340257.1	tautomerase family protein	-
PSF113_RS55855 (PSF113_5012)	-	5814075..5814974 (+)	900	WP_041476152.1	LysR substrate-binding domain-containing protein	-
PSF113_RS55860 (PSF113_5013)	-	5815564..5816190 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31938.18 Da
• Isoelectric Point: 8.3523

>NTDB_id=43752 PSF113_RS55825 WP_041476149.1 5810820..5811689(+) (pilD) [Pseudomonas ogarae]
MPLSGFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLHREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELTCGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=43752 PSF113_RS55825 WP_041476149.1 5810820..5811689(+) (pilD) [Pseudomonas ogarae]
ATGCCCCTGAGCGGATTCTTCGTGCTGTACCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
TTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCCACCGTGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATTGGCAGGCG
CTACCCCCTGACCGAATTGACCTGCGGTGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGCCCTTGAACCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTATTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCTTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.128	97.578	0.509
pilD	Vibrio campbellii strain DS40M4	50.53	97.924	0.495
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474
pilD	Acinetobacter baumannii D1279779	47.872	97.578	0.467
pilD	Acinetobacter nosocomialis M2	47.872	97.578	0.467