Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4Q83_RS21095 Genome accession   NZ_CP049017
Coordinates   4517937..4518398 (+) Length   153 a.a.
NCBI ID   WP_128420135.1    Uniprot ID   -
Organism   Xanthomonas theicola strain CFBP 4691     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4512937..4523398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4Q83_RS21075 (G4Q83_21155) - 4513199..4514536 (+) 1338 WP_128420139.1 HAMP domain-containing sensor histidine kinase -
  G4Q83_RS21080 (G4Q83_21160) coaE 4514796..4515416 (-) 621 WP_128420138.1 dephospho-CoA kinase -
  G4Q83_RS21085 (G4Q83_21165) - 4515430..4516293 (-) 864 WP_128420137.1 A24 family peptidase -
  G4Q83_RS21090 (G4Q83_21170) pilC 4516300..4517556 (-) 1257 WP_128420136.1 type II secretion system F family protein Machinery gene
  G4Q83_RS21095 (G4Q83_21175) pilE 4517937..4518398 (+) 462 WP_128420135.1 pilin Machinery gene
  G4Q83_RS21100 (G4Q83_21180) pilB 4518542..4520278 (+) 1737 WP_128420134.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4Q83_RS21105 (G4Q83_21185) pilR 4520427..4521812 (-) 1386 WP_128420133.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15678.97 Da        Isoelectric Point: 8.4815

>NTDB_id=424337 G4Q83_RS21095 WP_128420135.1 4517937..4518398(+) (pilE) [Xanthomonas theicola strain CFBP 4691]
MKKQQGFTLIELMIVVAIIAILAAIAIPAYQDYIARAQMSEAMTLASGQKVGVSEVFANKATCPSNTTASDGFAAASDIN
GKYVSQVQVGGTAAVTGNCTIVATMKSTGISQGIQGKTLTLTLSNADKGSNVWACTSTAQQKYLPTACTGTSS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=424337 G4Q83_RS21095 WP_128420135.1 4517937..4518398(+) (pilE) [Xanthomonas theicola strain CFBP 4691]
ATGAAGAAGCAGCAGGGCTTTACCCTGATCGAACTGATGATCGTCGTCGCAATCATCGCCATCCTGGCCGCCATTGCTAT
CCCGGCCTATCAGGACTACATCGCACGTGCCCAGATGTCCGAGGCGATGACCTTGGCAAGTGGGCAAAAAGTTGGAGTGT
CTGAAGTCTTCGCTAATAAGGCCACCTGCCCTTCGAATACTACTGCTAGTGACGGTTTCGCCGCAGCGAGTGATATCAAT
GGTAAGTACGTAAGCCAGGTGCAGGTCGGTGGCACTGCTGCGGTTACCGGTAATTGCACGATCGTGGCTACCATGAAATC
TACAGGCATTTCCCAGGGCATCCAAGGCAAGACTTTGACTCTGACGCTGTCGAACGCTGACAAAGGTTCCAACGTCTGGG
CTTGCACGTCCACTGCCCAGCAGAAGTATTTGCCGACTGCTTGCACCGGCACCAGCTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-149)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

44.91

100

0.49
  pilE Neisseria gonorrhoeae MS11

41.916

100

0.458
  comP Acinetobacter baylyi ADP1

42.208

100

0.425
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39.375

100

0.412
  pilA Acinetobacter baumannii strain A118

40.523

100

0.405
  pilA Pseudomonas aeruginosa PAK

38.71

100

0.392
  pilA Acinetobacter nosocomialis M2

48.387

81.046

0.392
  pilA2 Legionella pneumophila strain ERS1305867

40.136

96.078

0.386
  pilA2 Legionella pneumophila str. Paris

40.136

96.078

0.386
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.726

95.425

0.379
  pilA/pilA1 Eikenella corrodens VA1

37.013

100

0.373