Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G4Q83_RS21090 Genome accession   NZ_CP049017
Coordinates   4516300..4517556 (-) Length   418 a.a.
NCBI ID   WP_128420136.1    Uniprot ID   A0A2S6ZFP2
Organism   Xanthomonas theicola strain CFBP 4691     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4511300..4522556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4Q83_RS21065 (G4Q83_21145) - 4511637..4512182 (-) 546 WP_170069160.1 hypothetical protein -
  G4Q83_RS21070 (G4Q83_21150) - 4512148..4512825 (+) 678 WP_128420148.1 response regulator transcription factor -
  G4Q83_RS21075 (G4Q83_21155) - 4513199..4514536 (+) 1338 WP_128420139.1 HAMP domain-containing sensor histidine kinase -
  G4Q83_RS21080 (G4Q83_21160) coaE 4514796..4515416 (-) 621 WP_128420138.1 dephospho-CoA kinase -
  G4Q83_RS21085 (G4Q83_21165) - 4515430..4516293 (-) 864 WP_128420137.1 A24 family peptidase -
  G4Q83_RS21090 (G4Q83_21170) pilC 4516300..4517556 (-) 1257 WP_128420136.1 type II secretion system F family protein Machinery gene
  G4Q83_RS21095 (G4Q83_21175) pilE 4517937..4518398 (+) 462 WP_128420135.1 pilin Machinery gene
  G4Q83_RS21100 (G4Q83_21180) pilB 4518542..4520278 (+) 1737 WP_128420134.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4Q83_RS21105 (G4Q83_21185) pilR 4520427..4521812 (-) 1386 WP_128420133.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45660.93 Da        Isoelectric Point: 10.1946

>NTDB_id=424336 G4Q83_RS21090 WP_128420136.1 4516300..4517556(-) (pilC) [Xanthomonas theicola strain CFBP 4691]
MSATRSAVSKQPVTRGTSQQVPFVWEGTDKRGVRMKGEQAAKNANLLRAELRRQGITPSLVKPKPKPLFGAAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVAAYKENIEALKGKIKKALFYPAMVMAVALIVSSILLVWVVPQFEDVFKSFGAELPAFTQMIVAASRFMVAYWWM
LLFVLVGSIVGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFARTLAVTFRAGVPLVEALDIVAGATGSSVYEK
SVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=424336 G4Q83_RS21090 WP_128420136.1 4516300..4517556(-) (pilC) [Xanthomonas theicola strain CFBP 4691]
ATGTCCGCAACTCGCAGCGCAGTATCCAAACAGCCCGTCACGCGGGGAACCAGCCAGCAGGTGCCTTTCGTGTGGGAGGG
AACCGACAAGCGCGGCGTCAGGATGAAGGGCGAGCAGGCCGCCAAGAACGCCAACCTGCTGCGCGCGGAGTTGCGCCGCC
AGGGCATCACCCCATCGCTGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCGCGGCCGGCAGCAAGATCAGCGCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCCGGCGTGCCCATCGTGGGGTCGCTGGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATCCGCACCGACATCGAGGGCGGCTCGTCGCTGTACGAGG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAGGGCGCCGGCGTGCTCGAA
ACCGTGCTGGAGACGGTGGCGGCCTACAAGGAAAACATCGAGGCGCTGAAGGGCAAGATCAAGAAGGCCTTGTTCTATCC
GGCCATGGTCATGGCGGTCGCCTTGATCGTCAGTTCGATCCTGCTGGTGTGGGTGGTGCCGCAGTTCGAGGATGTGTTCA
AGAGCTTTGGCGCGGAGCTGCCTGCGTTCACGCAGATGATCGTGGCCGCCTCGCGCTTCATGGTCGCCTACTGGTGGATG
CTGCTGTTCGTGTTGGTGGGCAGCATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCATCGATGCAGCACGGCATGGA
TCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTGGCGCGCTTCGCGCGCACGCTCGCGG
TGACCTTCCGCGCCGGCGTGCCGCTGGTGGAGGCGCTGGACATCGTCGCCGGCGCCACCGGCAGCAGCGTCTACGAGAAA
TCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTATCCGGTCAACGTGGCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGCGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGCTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCGTCCGTGGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6ZFP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.737

0.502
  pilC Acinetobacter baylyi ADP1

50.868

96.411

0.49
  pilC Acinetobacter baumannii D1279779

50.868

96.411

0.49
  pilC Legionella pneumophila strain ERS1305867

51.515

94.737

0.488
  pilG Neisseria gonorrhoeae MS11

43

95.694

0.411
  pilG Neisseria meningitidis 44/76-A

42.5

95.694

0.407
  pilC Vibrio cholerae strain A1552

40.594

96.651

0.392
  pilC Thermus thermophilus HB27

38.5

95.694

0.368
  pilC Vibrio campbellii strain DS40M4

38.384

94.737

0.364