Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G4Q83_RS21105 Genome accession   NZ_CP049017
Coordinates   4520427..4521812 (-) Length   461 a.a.
NCBI ID   WP_128420133.1    Uniprot ID   A0A2S6ZFQ4
Organism   Xanthomonas theicola strain CFBP 4691     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4515427..4526812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4Q83_RS21085 (G4Q83_21165) - 4515430..4516293 (-) 864 WP_128420137.1 A24 family peptidase -
  G4Q83_RS21090 (G4Q83_21170) pilC 4516300..4517556 (-) 1257 WP_128420136.1 type II secretion system F family protein Machinery gene
  G4Q83_RS21095 (G4Q83_21175) pilE 4517937..4518398 (+) 462 WP_128420135.1 pilin Machinery gene
  G4Q83_RS21100 (G4Q83_21180) pilB 4518542..4520278 (+) 1737 WP_128420134.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4Q83_RS21105 (G4Q83_21185) pilR 4520427..4521812 (-) 1386 WP_128420133.1 sigma-54 dependent transcriptional regulator Regulator
  G4Q83_RS21110 (G4Q83_21190) - 4521892..4523499 (-) 1608 WP_128420132.1 HAMP domain-containing sensor histidine kinase -
  G4Q83_RS21115 (G4Q83_21195) sucC 4523741..4524904 (+) 1164 WP_128420131.1 ADP-forming succinate--CoA ligase subunit beta -
  G4Q83_RS21120 (G4Q83_21200) sucD 4524931..4525803 (+) 873 WP_128420130.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49391.88 Da        Isoelectric Point: 6.8913

>NTDB_id=424339 G4Q83_RS21105 WP_128420133.1 4520427..4521812(-) (pilR) [Xanthomonas theicola strain CFBP 4691]
MNETRSALVVDDERDIRELLVLTLGRMGLRIGTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNSERAAPAPAPEQASRLLGASTAMDALRTTIAKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLDE
VAELPLPMQVKLLRAIQEKSVRPVGAATEAAVDARILSATHKDLAGLVADGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAILARLAKGHGRVVPLLSPSALDALDRYAFPGNVRELENILERALAMAEGDQINAADLHLPQPGNAARAAAEAAPVL
PPGVVDIDPAASALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=424339 G4Q83_RS21105 WP_128420133.1 4520427..4521812(-) (pilR) [Xanthomonas theicola strain CFBP 4691]
ATGAACGAAACCCGAAGCGCGCTCGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTACTGACCCTGGGCAGGAT
GGGGCTGCGCATCGGCACCGCCGCCAACCTCGCCGAAGCCCGCGAGCTGCTGGCGAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCATTATCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCTTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAGCGCGCCGCACCGGCGCCGGCGC
CGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGACCGCCATGGACGCGCTGCGCACCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGCGCAGGGCGCGCG
CGCCGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCATGCCGATCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCGCGGC
GACCGAGGCGGCGGTGGACGCGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGGGCTGGTCGCCGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCGCAA
CTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGGGCCATGGCCGGGTCGTCCCGCTGCTGTCCCCGTCCGCGCTGGACGC
GCTCGACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGGGCG
ACCAGATCAACGCCGCCGACCTGCACCTGCCGCAACCGGGCAACGCCGCCCGCGCCGCGGCCGAGGCCGCCCCCGTGCTG
CCGCCGGGCGTGGTCGACATCGACCCGGCCGCGTCGGCCCTGCCCTCCTACATCGAGCAACTCGAGCGCGCCGCGATCCA
GAAGGCGCTCGAGGAAAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGCGCGCTGCGCTACA
AGCTCAAGAAGCTGGGGATGGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6ZFQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.009

99.349

0.616
  pilR Acinetobacter baumannii strain A118

48.268

100

0.484