Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | SALIVB_RS09585 | Genome accession | NC_015760 |
| Coordinates | 2071699..2072013 (-) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius CCHSS3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2066699..2077013
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SALIVB_RS09545 (SALIVB_1992) | - | 2066963..2067619 (-) | 657 | WP_013991260.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SALIVB_RS09550 (SALIVB_1993) | - | 2067631..2067828 (-) | 198 | WP_013991261.1 | helix-turn-helix transcriptional regulator | - |
| SALIVB_RS09555 (SALIVB_1994) | - | 2068079..2069272 (-) | 1194 | WP_003095894.1 | acetate kinase | - |
| SALIVB_RS09560 (SALIVB_1995) | comYH | 2069329..2070285 (-) | 957 | WP_013991262.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SALIVB_RS09565 (SALIVB_1996) | comGG | 2070330..2070647 (-) | 318 | WP_041817287.1 | competence type IV pilus minor pilin ComGG | - |
| SALIVB_RS09570 (SALIVB_1997) | comYF | 2070625..2071062 (-) | 438 | WP_013991264.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SALIVB_RS09575 (SALIVB_1998) | comGE | 2071049..2071279 (-) | 231 | WP_013991265.1 | competence type IV pilus minor pilin ComGE | - |
| SALIVB_RS09580 (SALIVB_1999) | comYD | 2071311..2071739 (-) | 429 | WP_014632541.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SALIVB_RS09585 (SALIVB_2000) | comYC | 2071699..2072013 (-) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SALIVB_RS09590 (SALIVB_2001) | comYB | 2072022..2073122 (-) | 1101 | WP_155114411.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SALIVB_RS09595 (SALIVB_2002) | comYA | 2073004..2073945 (-) | 942 | WP_013991268.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SALIVB_RS09600 (SALIVB_2003) | - | 2074025..2074387 (-) | 363 | WP_002887019.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=41851 SALIVB_RS09585 WP_037611125.1 2071699..2072013(-) (comYC) [Streptococcus salivarius CCHSS3]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=41851 SALIVB_RS09585 WP_037611125.1 2071699..2072013(-) (comYC) [Streptococcus salivarius CCHSS3]
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGTTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGTTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAATAAGACAGCTAGCTTAGCTGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTATTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |