Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SALIVB_RS09590 Genome accession   NC_015760
Coordinates   2072022..2073122 (-) Length   366 a.a.
NCBI ID   WP_155114411.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2067022..2078122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09550 (SALIVB_1993) - 2067631..2067828 (-) 198 WP_013991261.1 helix-turn-helix transcriptional regulator -
  SALIVB_RS09555 (SALIVB_1994) - 2068079..2069272 (-) 1194 WP_003095894.1 acetate kinase -
  SALIVB_RS09560 (SALIVB_1995) comYH 2069329..2070285 (-) 957 WP_013991262.1 class I SAM-dependent methyltransferase Machinery gene
  SALIVB_RS09565 (SALIVB_1996) comGG 2070330..2070647 (-) 318 WP_041817287.1 competence type IV pilus minor pilin ComGG -
  SALIVB_RS09570 (SALIVB_1997) comYF 2070625..2071062 (-) 438 WP_013991264.1 competence type IV pilus minor pilin ComGF Machinery gene
  SALIVB_RS09575 (SALIVB_1998) comGE 2071049..2071279 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  SALIVB_RS09580 (SALIVB_1999) comYD 2071311..2071739 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  SALIVB_RS09585 (SALIVB_2000) comYC 2071699..2072013 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  SALIVB_RS09590 (SALIVB_2001) comYB 2072022..2073122 (-) 1101 WP_155114411.1 competence type IV pilus assembly protein ComGB Machinery gene
  SALIVB_RS09595 (SALIVB_2002) comYA 2073004..2073945 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  SALIVB_RS09600 (SALIVB_2003) - 2074025..2074387 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41725.83 Da        Isoelectric Point: 10.2587

>NTDB_id=41852 SALIVB_RS09590 WP_155114411.1 2072022..2073122(-) (comYB) [Streptococcus salivarius CCHSS3]
MPVKISKAIRQSAGTNSWKAWLNKDISRKGISKGKKLKINQQFKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGNGKENWAVQLVQIFPQLFFVTLCGLLVLSLILYLWVKRQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVALMKEQKSKLFRELGADLEEALMLGQSFPDRIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=41852 SALIVB_RS09590 WP_155114411.1 2072022..2073122(-) (comYB) [Streptococcus salivarius CCHSS3]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAATCAGCTGGAACCAACAGTTGGAAGGCTTGGTTAAACAAGGATATCTC
ACGGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAATTTAAGGTTATTCAGCTCTTCAAACAACTTTTAA
AGGCAGGGTTTACCTTGACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTGTCTCTTATG
AAAGCGAGTTTAATGCGAGGCGACAGGTTGGACCAGATGTTTGCGTCAGTAGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGTATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTATCCTATTCTACTTCTGGGTTTCCTGATTCTGATTATGTTGGGGCTCAAAAAT
TATCTTCTGCCTCAATTGTTAGAGGGGAATGGTAAGGAGAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTCTT
TTTTGTGACTTTGTGCGGACTGCTTGTATTAAGCTTAATTCTCTATCTATGGGTGAAACGCCAGCCAGCACTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTCATAGGCCAAACTGTCAGGCTATATACGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGGCAAGGTATTGACTTACTAGACTTAGTTGCTCTAATGAAAGAGCAAAAATCAAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAAGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCCAGTCACCCTTTCTTCACTAAGG
AACTATCCTTAATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.81

93.716

0.514
  comYB Streptococcus mutans UA159

54.81

93.716

0.514
  comYB Streptococcus gordonii str. Challis substr. CH1

51.603

93.716

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

50.147

92.623

0.464
  comGB/cglB Streptococcus mitis SK321

49.408

92.35

0.456
  comGB/cglB Streptococcus pneumoniae Rx1

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae D39

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae R6

49.112

92.35

0.454
  comGB/cglB Streptococcus pneumoniae TIGR4

49.112

92.35

0.454
  comGB Lactococcus lactis subsp. cremoris KW2

44.412

92.896

0.413

Multiple sequence alignment