Detailed information NTG0041850

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SALIVB_RS09580
• Genome accession: NC_015760
• Coordinates: 2071311..2071739 (-)
• Length: 142 a.a.
• NCBI ID: WP_014632541.1
• Uniprot ID: -
• Organism: Streptococcus salivarius CCHSS3
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2066311..2076739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALIVB_RS09540 (SALIVB_1991)	-	2066443..2066889 (-)	447	WP_013991259.1	hypothetical protein	-
SALIVB_RS09545 (SALIVB_1992)	-	2066963..2067619 (-)	657	WP_013991260.1	CPBP family intramembrane glutamic endopeptidase	-
SALIVB_RS09550 (SALIVB_1993)	-	2067631..2067828 (-)	198	WP_013991261.1	helix-turn-helix transcriptional regulator	-
SALIVB_RS09555 (SALIVB_1994)	-	2068079..2069272 (-)	1194	WP_003095894.1	acetate kinase	-
SALIVB_RS09560 (SALIVB_1995)	comYH	2069329..2070285 (-)	957	WP_013991262.1	class I SAM-dependent methyltransferase	Machinery gene
SALIVB_RS09565 (SALIVB_1996)	comGG	2070330..2070647 (-)	318	WP_041817287.1	competence type IV pilus minor pilin ComGG	-
SALIVB_RS09570 (SALIVB_1997)	comYF	2070625..2071062 (-)	438	WP_013991264.1	competence type IV pilus minor pilin ComGF	Machinery gene
SALIVB_RS09575 (SALIVB_1998)	comGE	2071049..2071279 (-)	231	WP_013991265.1	competence type IV pilus minor pilin ComGE	-
SALIVB_RS09580 (SALIVB_1999)	comYD	2071311..2071739 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
SALIVB_RS09585 (SALIVB_2000)	comYC	2071699..2072013 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
SALIVB_RS09590 (SALIVB_2001)	comYB	2072022..2073122 (-)	1101	WP_155114411.1	competence type IV pilus assembly protein ComGB	Machinery gene
SALIVB_RS09595 (SALIVB_2002)	comYA	2073004..2073945 (-)	942	WP_013991268.1	competence type IV pilus ATPase ComGA	Machinery gene
SALIVB_RS09600 (SALIVB_2003)	-	2074025..2074387 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15729.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=41850 SALIVB_RS09580 WP_014632541.1 2071311..2071739(-) (comYD) [Streptococcus salivarius CCHSS3]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=41850 SALIVB_RS09580 WP_014632541.1 2071311..2071739(-) (comYD) [Streptococcus salivarius CCHSS3]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTAAGTTTGTCAGGCTCAGTCACTGGTATTTTTCAACAGGTTGAAACGAACCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTGGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387