Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SALIVB_RS09560 Genome accession   NC_015760
Coordinates   2069329..2070285 (-) Length   318 a.a.
NCBI ID   WP_013991262.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064329..2075285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09530 (SALIVB_1989) proC 2064871..2065641 (+) 771 WP_013991257.1 pyrroline-5-carboxylate reductase -
  SALIVB_RS09535 (SALIVB_1990) - 2065668..2066330 (-) 663 WP_013991258.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVB_RS09540 (SALIVB_1991) - 2066443..2066889 (-) 447 WP_013991259.1 hypothetical protein -
  SALIVB_RS09545 (SALIVB_1992) - 2066963..2067619 (-) 657 WP_013991260.1 CPBP family intramembrane glutamic endopeptidase -
  SALIVB_RS09550 (SALIVB_1993) - 2067631..2067828 (-) 198 WP_013991261.1 helix-turn-helix transcriptional regulator -
  SALIVB_RS09555 (SALIVB_1994) - 2068079..2069272 (-) 1194 WP_003095894.1 acetate kinase -
  SALIVB_RS09560 (SALIVB_1995) comYH 2069329..2070285 (-) 957 WP_013991262.1 class I SAM-dependent methyltransferase Machinery gene
  SALIVB_RS09565 (SALIVB_1996) comGG 2070330..2070647 (-) 318 WP_041817287.1 competence type IV pilus minor pilin ComGG -
  SALIVB_RS09570 (SALIVB_1997) comYF 2070625..2071062 (-) 438 WP_013991264.1 competence type IV pilus minor pilin ComGF Machinery gene
  SALIVB_RS09575 (SALIVB_1998) comGE 2071049..2071279 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  SALIVB_RS09580 (SALIVB_1999) comYD 2071311..2071739 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  SALIVB_RS09585 (SALIVB_2000) comYC 2071699..2072013 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  SALIVB_RS09590 (SALIVB_2001) comYB 2072022..2073122 (-) 1101 WP_155114411.1 competence type IV pilus assembly protein ComGB Machinery gene
  SALIVB_RS09595 (SALIVB_2002) comYA 2073004..2073945 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  SALIVB_RS09600 (SALIVB_2003) - 2074025..2074387 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35809.68 Da        Isoelectric Point: 4.3440

>NTDB_id=41848 SALIVB_RS09560 WP_013991262.1 2069329..2070285(-) (comYH) [Streptococcus salivarius CCHSS3]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDFLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEILKDFTDNFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=41848 SALIVB_RS09560 WP_013991262.1 2069329..2070285(-) (comYH) [Streptococcus salivarius CCHSS3]
ATGAATTTTGAAGCAATTGAGACGGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTAGAGATTGGTTCAGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTAGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
GTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGACTTTCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTCGTGCTTAAAAAACAAACTGAAAATGCTCCAGAGACCTTCGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGATCCTCAAGGATTTCACAGATAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.841

99.057

0.692
  comYH Streptococcus mutans UA140

69.841

99.057

0.692

Multiple sequence alignment