Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GQR42_RS20650 | Genome accession | NZ_CP046973 |
| Coordinates | 4158634..4159740 (-) | Length | 368 a.a. |
| NCBI ID | WP_158201417.1 | Uniprot ID | - |
| Organism | Microcystis aeruginosa FD4 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4153634..4164740
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQR42_RS20635 (GQR42_20670) | - | 4153906..4156476 (+) | 2571 | WP_158201414.1 | TIGR03960 family B12-binding radical SAM protein | - |
| GQR42_RS20640 (GQR42_20675) | - | 4156519..4157055 (-) | 537 | WP_158201415.1 | hypothetical protein | - |
| GQR42_RS20645 (GQR42_20680) | - | 4157150..4158364 (-) | 1215 | WP_158201416.1 | type II secretion system F family protein | - |
| GQR42_RS20650 (GQR42_20685) | pilT | 4158634..4159740 (-) | 1107 | WP_158201417.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GQR42_RS20655 (GQR42_20690) | - | 4159893..4161371 (-) | 1479 | Protein_4145 | GspE/PulE family protein | - |
| GQR42_RS20665 (GQR42_20700) | - | 4162581..4163132 (-) | 552 | Protein_4147 | type II/IV secretion system protein | - |
| GQR42_RS29025 (GQR42_20705) | - | 4163222..4163371 (-) | 150 | WP_233271104.1 | hypothetical protein | - |
| GQR42_RS20670 (GQR42_20710) | - | 4163642..4163818 (+) | 177 | WP_158201418.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 40492.74 Da Isoelectric Point: 8.2582
>NTDB_id=409776 GQR42_RS20650 WP_158201417.1 4158634..4159740(-) (pilT) [Microcystis aeruginosa FD4]
MELMIEDLMQQLVEMGGSDMHIQSGAPVYFRISGKLAPINQESLTPQDCQKLIFSMLNNTQRKELEQNWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEQLNLSEVVRELSERPRGLILVTGQTGSGKTTTLAAILDLINRTRSEHILTV
EDPIEYVFPNIKSLFHQRQKGEDTKSFANALRAALREDPDIILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAGTVD
RIIDVFPANQQAQIRAMLSNSLLAVFSQNLVKKKNPKPGEFGRAMVQEIMVVTPAIANLIREGKAPQVYSAIQTGMKLGM
QTMEQGLANLVVRGVVSLEEAISKSGKPDELQRLIAGASANAKTKARI
MELMIEDLMQQLVEMGGSDMHIQSGAPVYFRISGKLAPINQESLTPQDCQKLIFSMLNNTQRKELEQNWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEQLNLSEVVRELSERPRGLILVTGQTGSGKTTTLAAILDLINRTRSEHILTV
EDPIEYVFPNIKSLFHQRQKGEDTKSFANALRAALREDPDIILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAGTVD
RIIDVFPANQQAQIRAMLSNSLLAVFSQNLVKKKNPKPGEFGRAMVQEIMVVTPAIANLIREGKAPQVYSAIQTGMKLGM
QTMEQGLANLVVRGVVSLEEAISKSGKPDELQRLIAGASANAKTKARI
Nucleotide
Download Length: 1107 bp
>NTDB_id=409776 GQR42_RS20650 WP_158201417.1 4158634..4159740(-) (pilT) [Microcystis aeruginosa FD4]
ATGGAATTAATGATCGAAGATTTAATGCAACAATTGGTCGAGATGGGCGGTTCCGATATGCACATTCAGTCTGGTGCGCC
GGTCTATTTTCGCATTAGTGGCAAACTCGCCCCGATTAATCAAGAATCTTTAACCCCGCAAGATTGTCAGAAATTGATTT
TTAGTATGCTCAATAATACTCAAAGAAAAGAGTTAGAGCAGAATTGGGAATTAGACTGTTCATACGGGGTGAAAGGATTG
GCAAGATTTAGGGTCAATGTTTATAAAGAAAGGGGGGCTTATGCAGCTTGTTTACGGGCTTTGTCCTCTAAAATTCCTAA
CTTTGAACAATTAAATTTATCAGAAGTAGTGCGGGAATTATCGGAAAGACCGAGGGGATTAATTCTCGTAACTGGGCAAA
CAGGTTCAGGTAAAACTACCACTTTAGCGGCAATTTTAGACTTAATTAATCGGACTCGTTCCGAGCATATTTTAACTGTA
GAAGATCCAATTGAATACGTTTTCCCTAATATAAAAAGCCTGTTTCACCAACGACAAAAAGGAGAAGATACCAAGAGTTT
TGCTAACGCATTAAGAGCCGCTTTACGGGAAGATCCTGATATTATCCTTGTGGGAGAAATGCGGGATTTAGAAACAATTA
GTTTGGCAATCACGGCGGCGGAAACCGGTCACTTAGTCTTCGGAACCCTACACACTAGCTCGGCAGCGGGAACAGTGGAT
CGGATTATTGACGTTTTTCCTGCTAACCAACAGGCACAAATTCGCGCCATGTTATCCAATTCTCTACTAGCAGTTTTTAG
TCAAAACCTAGTCAAGAAAAAAAATCCTAAACCGGGGGAATTTGGTCGGGCAATGGTACAGGAAATCATGGTGGTAACTC
CAGCGATCGCCAACCTAATACGCGAAGGAAAAGCCCCCCAAGTCTATTCAGCAATTCAAACGGGAATGAAGTTAGGAATG
CAAACCATGGAACAGGGATTAGCTAATTTAGTTGTTAGGGGTGTTGTCTCGTTGGAAGAGGCCATTTCTAAAAGCGGCAA
ACCCGATGAATTACAACGTCTTATCGCTGGGGCCAGCGCTAACGCTAAAACTAAAGCCCGGATTTAA
ATGGAATTAATGATCGAAGATTTAATGCAACAATTGGTCGAGATGGGCGGTTCCGATATGCACATTCAGTCTGGTGCGCC
GGTCTATTTTCGCATTAGTGGCAAACTCGCCCCGATTAATCAAGAATCTTTAACCCCGCAAGATTGTCAGAAATTGATTT
TTAGTATGCTCAATAATACTCAAAGAAAAGAGTTAGAGCAGAATTGGGAATTAGACTGTTCATACGGGGTGAAAGGATTG
GCAAGATTTAGGGTCAATGTTTATAAAGAAAGGGGGGCTTATGCAGCTTGTTTACGGGCTTTGTCCTCTAAAATTCCTAA
CTTTGAACAATTAAATTTATCAGAAGTAGTGCGGGAATTATCGGAAAGACCGAGGGGATTAATTCTCGTAACTGGGCAAA
CAGGTTCAGGTAAAACTACCACTTTAGCGGCAATTTTAGACTTAATTAATCGGACTCGTTCCGAGCATATTTTAACTGTA
GAAGATCCAATTGAATACGTTTTCCCTAATATAAAAAGCCTGTTTCACCAACGACAAAAAGGAGAAGATACCAAGAGTTT
TGCTAACGCATTAAGAGCCGCTTTACGGGAAGATCCTGATATTATCCTTGTGGGAGAAATGCGGGATTTAGAAACAATTA
GTTTGGCAATCACGGCGGCGGAAACCGGTCACTTAGTCTTCGGAACCCTACACACTAGCTCGGCAGCGGGAACAGTGGAT
CGGATTATTGACGTTTTTCCTGCTAACCAACAGGCACAAATTCGCGCCATGTTATCCAATTCTCTACTAGCAGTTTTTAG
TCAAAACCTAGTCAAGAAAAAAAATCCTAAACCGGGGGAATTTGGTCGGGCAATGGTACAGGAAATCATGGTGGTAACTC
CAGCGATCGCCAACCTAATACGCGAAGGAAAAGCCCCCCAAGTCTATTCAGCAATTCAAACGGGAATGAAGTTAGGAATG
CAAACCATGGAACAGGGATTAGCTAATTTAGTTGTTAGGGGTGTTGTCTCGTTGGAAGAGGCCATTTCTAAAAGCGGCAA
ACCCGATGAATTACAACGTCTTATCGCTGGGGCCAGCGCTAACGCTAAAACTAAAGCCCGGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Legionella pneumophila strain ERS1305867 |
52.174 |
93.75 |
0.489 |
| pilT | Legionella pneumophila strain Lp02 |
52.174 |
93.75 |
0.489 |
| pilT | Pseudomonas aeruginosa PAK |
51.873 |
94.293 |
0.489 |
| pilT | Acinetobacter baumannii D1279779 |
51.297 |
94.293 |
0.484 |
| pilT | Acinetobacter nosocomialis M2 |
51.297 |
94.293 |
0.484 |
| pilT | Acinetobacter baumannii strain A118 |
51.297 |
94.293 |
0.484 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.009 |
94.293 |
0.481 |
| pilT | Acinetobacter baylyi ADP1 |
50.72 |
94.293 |
0.478 |
| pilT | Vibrio cholerae strain A1552 |
50.882 |
92.391 |
0.47 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.882 |
92.391 |
0.47 |
| pilT | Neisseria meningitidis 8013 |
49.263 |
92.12 |
0.454 |
| pilT | Neisseria gonorrhoeae MS11 |
48.968 |
92.12 |
0.451 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.658 |
97.011 |
0.443 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.177 |
95.38 |
0.364 |