Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GA660_RS03575 | Genome accession | NZ_CP045129 |
| Coordinates | 740625..741743 (-) | Length | 372 a.a. |
| NCBI ID | WP_005179770.1 | Uniprot ID | N9M802 |
| Organism | Acinetobacter indicus strain TQ04 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 682109..776751 | 740625..741743 | within | 0 |
Gene organization within MGE regions
Location: 682109..776751
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA660_RS03285 | - | 683246..685174 (+) | 1929 | WP_104495152.1 | flagellar protein FilF | - |
| GA660_RS03290 | - | 685245..685793 (-) | 549 | WP_104470910.1 | NUDIX hydrolase | - |
| GA660_RS03295 | - | 685916..686524 (+) | 609 | WP_160241023.1 | CoA pyrophosphatase | - |
| GA660_RS03300 | - | 686537..687064 (+) | 528 | WP_171502419.1 | gamma carbonic anhydrase family protein | - |
| GA660_RS03305 | tsaB | 687188..687853 (+) | 666 | WP_160241025.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| GA660_RS03310 | - | 687866..688690 (+) | 825 | WP_160241026.1 | undecaprenyl-diphosphate phosphatase | - |
| GA660_RS03315 | - | 688684..689511 (+) | 828 | WP_160241027.1 | class I SAM-dependent methyltransferase | - |
| GA660_RS03320 | - | 689625..691031 (+) | 1407 | WP_035363274.1 | C13 family peptidase | - |
| GA660_RS03325 | fghA | 691046..691882 (+) | 837 | WP_160241028.1 | S-formylglutathione hydrolase | - |
| GA660_RS03330 | - | 692002..693105 (+) | 1104 | WP_160241029.1 | YjgN family protein | - |
| GA660_RS03335 | - | 693117..694154 (+) | 1038 | WP_160241030.1 | M48 family metallopeptidase | - |
| GA660_RS03340 | - | 694171..694455 (-) | 285 | WP_160241031.1 | DUF2218 domain-containing protein | - |
| GA660_RS03345 | rpe | 694634..695320 (+) | 687 | WP_016659485.1 | ribulose-phosphate 3-epimerase | - |
| GA660_RS03350 | - | 695728..696195 (+) | 468 | WP_180056333.1 | hypothetical protein | - |
| GA660_RS03355 | - | 696237..698051 (+) | 1815 | WP_160241032.1 | copper resistance system multicopper oxidase | - |
| GA660_RS03360 | - | 698281..698982 (+) | 702 | WP_228718925.1 | copper resistance protein B | - |
| GA660_RS03365 | sugE | 699294..699611 (+) | 318 | WP_104472520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| GA660_RS03370 | - | 699645..700130 (+) | 486 | WP_005179878.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| GA660_RS03375 | - | 700365..701021 (+) | 657 | WP_160241034.1 | nuclease-related domain-containing protein | - |
| GA660_RS03380 | - | 701175..702269 (+) | 1095 | WP_160241035.1 | catalase family protein | - |
| GA660_RS03385 | - | 702348..703115 (-) | 768 | WP_016659477.1 | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | - |
| GA660_RS03390 | - | 703208..703888 (+) | 681 | WP_045795528.1 | HAD-IA family hydrolase | - |
| GA660_RS03395 | - | 703987..704454 (-) | 468 | WP_005179867.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| GA660_RS03400 | - | 704594..705847 (+) | 1254 | WP_160241036.1 | D-amino acid dehydrogenase | - |
| GA660_RS03405 | alr | 705870..706982 (+) | 1113 | WP_160241037.1 | alanine racemase | - |
| GA660_RS03410 | - | 707007..707369 (+) | 363 | WP_005179861.1 | RidA family protein | - |
| GA660_RS03415 | - | 707518..708981 (+) | 1464 | WP_016659472.1 | amino acid permease | - |
| GA660_RS03420 | - | 709037..709489 (-) | 453 | WP_005179856.1 | CopD family protein | - |
| GA660_RS03425 | - | 709509..710738 (-) | 1230 | WP_005179853.1 | beta-ketoacyl synthase N-terminal-like domain-containing protein | - |
| GA660_RS03430 | - | 711015..712463 (+) | 1449 | WP_160241038.1 | EcsC family protein | - |
| GA660_RS03435 | rpsL | 712627..713001 (+) | 375 | WP_002050319.1 | 30S ribosomal protein S12 | - |
| GA660_RS03440 | rpsG | 713181..713651 (+) | 471 | WP_005179845.1 | 30S ribosomal protein S7 | - |
| GA660_RS03445 | fusA | 713784..715919 (+) | 2136 | WP_160241039.1 | elongation factor G | - |
| GA660_RS03450 | tuf | 716014..717204 (+) | 1191 | WP_160241040.1 | elongation factor Tu | - |
| GA660_RS03455 | - | 717417..718298 (+) | 882 | WP_160241041.1 | metal-dependent hydrolase | - |
| GA660_RS03460 | rimI | 718402..718866 (+) | 465 | WP_160241042.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| GA660_RS03465 | - | 718886..719701 (-) | 816 | WP_005179833.1 | arginyltransferase | - |
| GA660_RS03470 | aat | 719718..720449 (-) | 732 | WP_005179830.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| GA660_RS03475 | trxB | 720530..721486 (-) | 957 | WP_016659465.1 | thioredoxin-disulfide reductase | - |
| GA660_RS03480 | - | 721734..724793 (+) | 3060 | WP_160241043.1 | DNA translocase FtsK | - |
| GA660_RS03485 | - | 724856..725143 (-) | 288 | WP_005179823.1 | PA4642 family protein | - |
| GA660_RS03490 | minE | 725346..725618 (-) | 273 | WP_160241044.1 | cell division topological specificity factor MinE | - |
| GA660_RS03495 | minD | 725621..726433 (-) | 813 | WP_005179808.1 | septum site-determining protein MinD | - |
| GA660_RS03500 | minC | 726502..727224 (-) | 723 | WP_005179806.1 | septum site-determining protein MinC | - |
| GA660_RS03505 | - | 727346..728401 (-) | 1056 | WP_035363269.1 | hypothetical protein | - |
| GA660_RS03510 | - | 728420..729340 (-) | 921 | WP_005179793.1 | acyltransferase | - |
| GA660_RS03515 | - | 729583..730233 (+) | 651 | WP_104472555.1 | OmpA family protein | - |
| GA660_RS03520 | - | 730361..732400 (+) | 2040 | WP_005179787.1 | UvrD-helicase domain-containing protein | - |
| GA660_RS03525 | dut | 732431..732883 (+) | 453 | WP_005179786.1 | dUTP diphosphatase | - |
| GA660_RS03530 | - | 733077..734501 (+) | 1425 | WP_005179784.1 | phosphomannomutase/phosphoglucomutase | - |
| GA660_RS03535 | argB | 734512..735414 (+) | 903 | WP_016659457.1 | acetylglutamate kinase | - |
| GA660_RS03540 | - | 735529..736341 (+) | 813 | WP_160241045.1 | GNAT family N-acetyltransferase | - |
| GA660_RS03545 | - | 736428..737276 (+) | 849 | WP_075168090.1 | class II glutamine amidotransferase | - |
| GA660_RS03550 | - | 737533..737988 (+) | 456 | WP_005179777.1 | bacteriohemerythrin | - |
| GA660_RS03555 | - | 738155..739237 (+) | 1083 | WP_127800517.1 | hypothetical protein | - |
| GA660_RS03560 | - | 739237..739560 (+) | 324 | WP_005179774.1 | RnfH family protein | - |
| GA660_RS03565 | - | 739603..740001 (-) | 399 | WP_005179773.1 | outer membrane protein assembly factor BamE | - |
| GA660_RS03570 | fur | 740114..740551 (+) | 438 | WP_005179771.1 | ferric iron uptake transcriptional regulator | - |
| GA660_RS03575 | pilU | 740625..741743 (-) | 1119 | WP_005179770.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GA660_RS03580 | pilT | 741771..742808 (-) | 1038 | WP_160241046.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GA660_RS03585 | - | 742932..743618 (+) | 687 | WP_005179764.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GA660_RS03590 | - | 743664..744761 (-) | 1098 | WP_160241047.1 | acyltransferase family protein | - |
| GA660_RS03595 | - | 744765..748370 (-) | 3606 | WP_160241048.1 | AAA family ATPase | - |
| GA660_RS03600 | - | 748380..749630 (-) | 1251 | WP_160241049.1 | exonuclease SbcCD subunit D C-terminal domain-containing protein | - |
| GA660_RS03605 | - | 750038..750487 (+) | 450 | WP_034598225.1 | ABZJ_00895 family protein | - |
| GA660_RS03610 | thiO | 750555..751679 (-) | 1125 | WP_160241050.1 | glycine oxidase ThiO | - |
| GA660_RS03615 | hemB | 751696..752709 (-) | 1014 | WP_160241051.1 | porphobilinogen synthase | - |
| GA660_RS03620 | - | 752818..753315 (+) | 498 | WP_034597877.1 | thioesterase family protein | - |
| GA660_RS03625 | glpK | 753437..754921 (-) | 1485 | WP_160241052.1 | glycerol kinase GlpK | - |
| GA660_RS03635 | - | 755596..756735 (+) | 1140 | WP_160241053.1 | tyrosine-type recombinase/integrase | - |
| GA660_RS03640 | - | 757001..757771 (+) | 771 | WP_160241054.1 | hypothetical protein | - |
| GA660_RS03645 | - | 757805..759700 (+) | 1896 | WP_160241055.1 | hypothetical protein | - |
| GA660_RS03650 | - | 760125..761096 (+) | 972 | WP_096902610.1 | inovirus-type Gp2 protein | - |
| GA660_RS03655 | - | 761408..762448 (+) | 1041 | WP_160241056.1 | DUF932 domain-containing protein | - |
| GA660_RS03660 | - | 762613..763689 (+) | 1077 | WP_096902608.1 | YqaJ viral recombinase family protein | - |
| GA660_RS03665 | - | 763787..764683 (+) | 897 | WP_160241057.1 | hydrolase or metal-binding protein | - |
| GA660_RS03670 | - | 764778..765005 (+) | 228 | WP_075168047.1 | helix-turn-helix transcriptional regulator | - |
| GA660_RS03675 | - | 765039..765635 (-) | 597 | WP_160241058.1 | putative adenosine monophosphate-protein transferase Fic | - |
| GA660_RS03680 | - | 765648..765818 (-) | 171 | WP_075168045.1 | YhfG family protein | - |
| GA660_RS03685 | - | 766442..767083 (+) | 642 | WP_160241059.1 | restriction endonuclease subunit S | - |
| GA660_RS03690 | - | 767095..768342 (+) | 1248 | WP_104470627.1 | N-6 DNA methylase | - |
| GA660_RS03695 | - | 768355..768618 (+) | 264 | WP_104470628.1 | hypothetical protein | - |
| GA660_RS03700 | - | 768782..771142 (+) | 2361 | WP_160241060.1 | class I SAM-dependent DNA methyltransferase | - |
| GA660_RS03705 | - | 771154..772362 (+) | 1209 | WP_160241061.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41757.97 Da Isoelectric Point: 6.6668
>NTDB_id=392126 GA660_RS03575 WP_005179770.1 740625..741743(-) (pilU) [Acinetobacter indicus strain TQ04]
MDFNDLLNLMIQQKASDLFITADVEPSMKINGQIVPVAKSKLTGEIVGQLLNSIMTDKQRKEFADTRECNFAITNRDKSA
RFRVSAFQQRDEPGMVLRRIETKIPTMEELKLPPILKDLAMTKRGIIIFVGATGTGKSTSLASIIGYRNQNSKGHIITIE
DPIEFVHEHAGCIITQREVGIDTDSFEVALKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVFATLHANNANQAIDR
IIHFFEADRHGQLFMDLSLNLKAIVAQQLIPTIDGNSRRAAIELLINSPLVSDLIRKGDVHEIKDLMKRSRELGMQTFDQ
ALYDLYKAKQISYKDALKHADSPNDLRLQIKLSEEGGERLMHATSNITFDGQ
MDFNDLLNLMIQQKASDLFITADVEPSMKINGQIVPVAKSKLTGEIVGQLLNSIMTDKQRKEFADTRECNFAITNRDKSA
RFRVSAFQQRDEPGMVLRRIETKIPTMEELKLPPILKDLAMTKRGIIIFVGATGTGKSTSLASIIGYRNQNSKGHIITIE
DPIEFVHEHAGCIITQREVGIDTDSFEVALKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVFATLHANNANQAIDR
IIHFFEADRHGQLFMDLSLNLKAIVAQQLIPTIDGNSRRAAIELLINSPLVSDLIRKGDVHEIKDLMKRSRELGMQTFDQ
ALYDLYKAKQISYKDALKHADSPNDLRLQIKLSEEGGERLMHATSNITFDGQ
Nucleotide
Download Length: 1119 bp
>NTDB_id=392126 GA660_RS03575 WP_005179770.1 740625..741743(-) (pilU) [Acinetobacter indicus strain TQ04]
ATGGACTTTAATGATTTATTGAATTTAATGATTCAGCAAAAAGCATCGGACCTGTTTATTACGGCCGATGTTGAGCCTTC
CATGAAAATTAACGGCCAGATTGTGCCAGTGGCCAAATCCAAACTGACCGGGGAAATTGTCGGCCAGCTGCTCAACTCGA
TTATGACCGACAAGCAGCGCAAGGAATTTGCCGATACCCGTGAATGTAACTTTGCCATCACCAACCGTGATAAAAGCGCA
CGTTTCCGTGTCAGCGCTTTTCAGCAGCGTGATGAACCGGGCATGGTGCTGCGTCGGATTGAAACCAAAATTCCGACCAT
GGAAGAACTGAAACTGCCACCGATTTTAAAAGATCTGGCCATGACCAAACGTGGCATCATCATCTTTGTCGGGGCAACCG
GTACCGGTAAATCGACCTCTTTGGCGTCAATTATTGGTTATCGTAACCAGAATTCCAAAGGTCATATCATCACCATTGAA
GACCCGATTGAATTTGTGCACGAACACGCCGGCTGTATTATTACCCAGCGTGAAGTAGGCATTGATACCGATTCGTTTGA
AGTGGCACTGAAAAACACCTTGCGTCAGGCCCCAGATGTGATCCTGATTGGTGAGATCCGTTCACGTGAAACCATGGATT
ATGCAATTGCCTTTGCCGAAACCGGTCACCTGGTATTTGCCACCCTGCACGCCAACAACGCCAACCAAGCCATTGACCGG
ATTATCCACTTCTTTGAGGCTGACCGTCATGGCCAGCTGTTTATGGATTTATCACTGAACCTGAAAGCCATTGTGGCACA
GCAGCTGATTCCTACTATTGATGGCAACTCACGTCGTGCCGCGATTGAACTGCTGATTAACTCGCCACTGGTGTCCGATT
TAATCCGTAAAGGCGATGTGCACGAAATTAAAGACCTGATGAAGCGTTCACGTGAGTTGGGTATGCAAACCTTTGACCAG
GCCTTGTATGACCTATATAAAGCCAAGCAGATCAGCTACAAAGATGCCCTGAAACATGCCGACTCGCCAAACGATTTGCG
TCTGCAAATCAAGCTGTCGGAAGAAGGCGGCGAGCGTTTAATGCATGCCACTTCAAATATTACCTTCGACGGACAATAA
ATGGACTTTAATGATTTATTGAATTTAATGATTCAGCAAAAAGCATCGGACCTGTTTATTACGGCCGATGTTGAGCCTTC
CATGAAAATTAACGGCCAGATTGTGCCAGTGGCCAAATCCAAACTGACCGGGGAAATTGTCGGCCAGCTGCTCAACTCGA
TTATGACCGACAAGCAGCGCAAGGAATTTGCCGATACCCGTGAATGTAACTTTGCCATCACCAACCGTGATAAAAGCGCA
CGTTTCCGTGTCAGCGCTTTTCAGCAGCGTGATGAACCGGGCATGGTGCTGCGTCGGATTGAAACCAAAATTCCGACCAT
GGAAGAACTGAAACTGCCACCGATTTTAAAAGATCTGGCCATGACCAAACGTGGCATCATCATCTTTGTCGGGGCAACCG
GTACCGGTAAATCGACCTCTTTGGCGTCAATTATTGGTTATCGTAACCAGAATTCCAAAGGTCATATCATCACCATTGAA
GACCCGATTGAATTTGTGCACGAACACGCCGGCTGTATTATTACCCAGCGTGAAGTAGGCATTGATACCGATTCGTTTGA
AGTGGCACTGAAAAACACCTTGCGTCAGGCCCCAGATGTGATCCTGATTGGTGAGATCCGTTCACGTGAAACCATGGATT
ATGCAATTGCCTTTGCCGAAACCGGTCACCTGGTATTTGCCACCCTGCACGCCAACAACGCCAACCAAGCCATTGACCGG
ATTATCCACTTCTTTGAGGCTGACCGTCATGGCCAGCTGTTTATGGATTTATCACTGAACCTGAAAGCCATTGTGGCACA
GCAGCTGATTCCTACTATTGATGGCAACTCACGTCGTGCCGCGATTGAACTGCTGATTAACTCGCCACTGGTGTCCGATT
TAATCCGTAAAGGCGATGTGCACGAAATTAAAGACCTGATGAAGCGTTCACGTGAGTTGGGTATGCAAACCTTTGACCAG
GCCTTGTATGACCTATATAAAGCCAAGCAGATCAGCTACAAAGATGCCCTGAAACATGCCGACTCGCCAAACGATTTGCG
TCTGCAAATCAAGCTGTCGGAAGAAGGCGGCGAGCGTTTAATGCATGCCACTTCAAATATTACCTTCGACGGACAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
75.926 |
100 |
0.772 |
| pilU | Pseudomonas stutzeri DSM 10701 |
68.464 |
99.731 |
0.683 |
| pilU | Vibrio cholerae strain A1552 |
57.55 |
94.355 |
0.543 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.486 |
93.011 |
0.395 |
| pilT | Legionella pneumophila strain Lp02 |
41.42 |
90.86 |
0.376 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.42 |
90.86 |
0.376 |
| pilT | Pseudomonas aeruginosa PAK |
40.462 |
93.011 |
0.376 |
| pilT | Acinetobacter baumannii D1279779 |
40.525 |
92.204 |
0.374 |
| pilT | Acinetobacter nosocomialis M2 |
40.525 |
92.204 |
0.374 |
| pilT | Acinetobacter baumannii strain A118 |
40.525 |
92.204 |
0.374 |
| pilT | Acinetobacter baylyi ADP1 |
39.942 |
92.204 |
0.368 |
| pilT | Neisseria gonorrhoeae MS11 |
40.294 |
91.398 |
0.368 |
| pilT | Neisseria meningitidis 8013 |
40.294 |
91.398 |
0.368 |
| pilT | Pseudomonas stutzeri DSM 10701 |
39.017 |
93.011 |
0.363 |