Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GSF71_RS02920 Genome accession   NZ_CP048116
Coordinates   593491..594165 (+) Length   224 a.a.
NCBI ID   WP_085391508.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 588491..599165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS02900 - 588825..589565 (-) 741 WP_035145739.1 MBL fold metallo-hydrolase -
  GSF71_RS02905 - 589695..590480 (-) 786 WP_162100845.1 DUF975 family protein -
  GSF71_RS02910 - 590498..592597 (-) 2100 WP_061827276.1 ABC transporter permease -
  GSF71_RS02915 - 592575..593351 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  GSF71_RS02920 braR 593491..594165 (+) 675 WP_085391508.1 response regulator transcription factor Regulator
  GSF71_RS02925 - 594175..595242 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  GSF71_RS02930 - 595352..596518 (+) 1167 WP_035145749.1 hypothetical protein -
  GSF71_RS02935 - 596552..597847 (-) 1296 WP_085391509.1 PTS sugar transporter subunit IIC -
  GSF71_RS02940 nrdG 598093..598674 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25977.95 Da        Isoelectric Point: 4.7301

>NTDB_id=367249 GSF71_RS02920 WP_085391508.1 593491..594165(+) (braR) [Latilactobacillus sakei strain MBEL1397]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIHDDFDTIFDRFLTDKPNLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=367249 GSF71_RS02920 WP_085391508.1 593491..594165(+) (braR) [Latilactobacillus sakei strain MBEL1397]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAGAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCACGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCAACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTGTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362

Multiple sequence alignment