Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FDP16_RS10335 Genome accession   NZ_CP040798
Coordinates   2088484..2089518 (-) Length   344 a.a.
NCBI ID   WP_256254487.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083484..2094518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS10295 (FDP16_10755) - 2083550..2084299 (-) 750 WP_176799577.1 CPBP family intramembrane glutamic endopeptidase -
  FDP16_RS10300 (FDP16_10760) - 2084446..2085636 (-) 1191 WP_176799578.1 acetate kinase -
  FDP16_RS10305 (FDP16_10765) comYH 2085673..2086638 (-) 966 WP_124765830.1 class I SAM-dependent methyltransferase Machinery gene
  FDP16_RS10310 (FDP16_10770) comGG 2086720..2087112 (-) 393 WP_176799579.1 competence type IV pilus minor pilin ComGG -
  FDP16_RS10315 (FDP16_10775) comGF/cglF 2087093..2087530 (-) 438 WP_176799580.1 competence type IV pilus minor pilin ComGF Machinery gene
  FDP16_RS10320 (FDP16_10780) comGE/cglE 2087514..2087807 (-) 294 WP_176799581.1 competence type IV pilus minor pilin ComGE Machinery gene
  FDP16_RS10325 (FDP16_10785) comYD 2087773..2088207 (-) 435 WP_176799582.1 competence type IV pilus minor pilin ComGD Machinery gene
  FDP16_RS10330 (FDP16_10790) comYC 2088167..2088484 (-) 318 WP_002896769.1 competence type IV pilus major pilin ComGC Machinery gene
  FDP16_RS10335 (FDP16_10795) comYB 2088484..2089518 (-) 1035 WP_256254487.1 competence type IV pilus assembly protein ComGB Machinery gene
  FDP16_RS10340 (FDP16_10800) comYA 2089448..2090389 (-) 942 WP_002896773.1 competence type IV pilus ATPase ComGA Machinery gene
  FDP16_RS10345 (FDP16_10805) - 2090519..2090899 (-) 381 WP_176799584.1 DUF1033 family protein -
  FDP16_RS10350 (FDP16_10810) - 2091038..2092099 (-) 1062 WP_176799585.1 zinc-dependent alcohol dehydrogenase family protein -
  FDP16_RS10355 (FDP16_10815) - 2092269..2093375 (-) 1107 WP_176799586.1 glycosyl hydrolase family 8 -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38930.93 Da        Isoelectric Point: 9.4984

>NTDB_id=367248 FDP16_RS10335 WP_256254487.1 2088484..2089518(-) (comYB) [Streptococcus sanguinis strain CGMH058]
MISFLQKDISVLSKGRPKKLSTPKQKKIIELFHNLFSSGFHLAEIVDFLRRSSLLEEVYVTEMRAGLSAGQSFSEIVSRL
GFSDSVVTQLSLSELHGNLTLSLGKIEAYLENLSKVKKKLIEVGTYPLMLLGFLVLIMVGLRNYLLPQLDSQNLATRLIN
HLPQIFLWSSLALAVLVSVALFYYRKSSKIRVFSKLAALPFIGRLVQAYLTAYYAREWGNMIGQGLELSQIFAIMQEQPS
QLFQEIGADMAVALQGGQGYADKVASYPFFKKELSLMIEYGEVKSKLGSELEVYAEKTWEEFFLRINRAMNFIQPLVFIF
VALVIVLLYAAMLLPIYQNMEVHL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=367248 FDP16_RS10335 WP_256254487.1 2088484..2089518(-) (comYB) [Streptococcus sanguinis strain CGMH058]
TTGATCAGCTTTTTGCAGAAGGACATATCAGTGCTGAGCAAAGGCAGACCGAAAAAATTGTCTACGCCTAAGCAGAAAAA
GATTATTGAGCTCTTTCATAATCTCTTTAGCAGTGGTTTTCACTTAGCAGAGATTGTAGACTTTCTGAGGCGAAGTTCCT
TGCTGGAGGAGGTATATGTCACTGAAATGCGGGCAGGATTGTCAGCTGGTCAGTCCTTTTCAGAGATTGTCAGTCGACTG
GGATTTTCCGACAGCGTGGTAACCCAGCTGTCCTTATCCGAGCTGCATGGCAATCTGACTCTAAGTCTGGGCAAAATTGA
GGCCTATCTGGAAAATCTATCCAAGGTTAAGAAAAAATTGATAGAGGTAGGAACCTATCCTCTCATGCTGCTGGGCTTTT
TGGTCCTTATCATGGTGGGATTGCGCAACTATCTTCTGCCTCAATTGGACAGCCAGAATCTAGCTACTCGGCTGATTAAT
CACCTGCCTCAGATCTTTTTGTGGAGCAGCCTTGCTTTAGCTGTCTTGGTTTCAGTGGCTCTCTTTTACTATCGAAAGTC
ATCCAAGATTCGTGTTTTCAGCAAACTAGCAGCTCTGCCTTTTATTGGACGTTTGGTACAGGCTTATTTGACCGCTTATT
ATGCTCGTGAATGGGGGAATATGATTGGTCAGGGCTTAGAACTGAGTCAGATTTTTGCGATTATGCAGGAGCAGCCTTCC
CAGCTCTTTCAGGAAATTGGAGCAGATATGGCTGTTGCTTTGCAAGGAGGTCAAGGCTATGCGGACAAGGTGGCAAGCTA
CCCTTTCTTTAAGAAAGAATTGTCCTTGATGATCGAGTACGGTGAGGTCAAATCCAAGCTAGGTAGTGAGCTGGAAGTCT
ATGCTGAAAAGACTTGGGAGGAATTTTTCCTACGTATCAACCGAGCCATGAATTTCATTCAGCCCCTAGTATTTATTTTT
GTTGCCTTAGTGATTGTTTTACTTTATGCGGCAATGCTCTTGCCCATTTATCAGAATATGGAGGTTCATTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.837

100

0.738
  comGB/cglB Streptococcus mitis NCTC 12261

70.238

97.674

0.686
  comGB/cglB Streptococcus mitis SK321

68.75

97.674

0.672
  comGB/cglB Streptococcus pneumoniae TIGR4

68.452

97.674

0.669
  comGB/cglB Streptococcus pneumoniae R6

68.452

97.674

0.669
  comGB/cglB Streptococcus pneumoniae Rx1

68.452

97.674

0.669
  comGB/cglB Streptococcus pneumoniae D39

68.452

97.674

0.669
  comYB Streptococcus mutans UA140

60.933

99.709

0.608
  comYB Streptococcus mutans UA159

60.933

99.709

0.608
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.965

0.497

Multiple sequence alignment