Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FDP16_RS10305 Genome accession   NZ_CP040798
Coordinates   2085673..2086638 (-) Length   321 a.a.
NCBI ID   WP_124765830.1    Uniprot ID   A0A3P1S0N6
Organism   Streptococcus sanguinis strain CGMH058     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080673..2091638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS10285 (FDP16_10745) folP 2081646..2082599 (-) 954 WP_176799575.1 dihydropteroate synthase -
  FDP16_RS10290 (FDP16_10750) - 2082794..2083432 (-) 639 WP_176799576.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  FDP16_RS10295 (FDP16_10755) - 2083550..2084299 (-) 750 WP_176799577.1 CPBP family intramembrane glutamic endopeptidase -
  FDP16_RS10300 (FDP16_10760) - 2084446..2085636 (-) 1191 WP_176799578.1 acetate kinase -
  FDP16_RS10305 (FDP16_10765) comYH 2085673..2086638 (-) 966 WP_124765830.1 class I SAM-dependent methyltransferase Machinery gene
  FDP16_RS10310 (FDP16_10770) comGG 2086720..2087112 (-) 393 WP_176799579.1 competence type IV pilus minor pilin ComGG -
  FDP16_RS10315 (FDP16_10775) comGF/cglF 2087093..2087530 (-) 438 WP_176799580.1 competence type IV pilus minor pilin ComGF Machinery gene
  FDP16_RS10320 (FDP16_10780) comGE/cglE 2087514..2087807 (-) 294 WP_176799581.1 competence type IV pilus minor pilin ComGE Machinery gene
  FDP16_RS10325 (FDP16_10785) comYD 2087773..2088207 (-) 435 WP_176799582.1 competence type IV pilus minor pilin ComGD Machinery gene
  FDP16_RS10330 (FDP16_10790) comYC 2088167..2088484 (-) 318 WP_002896769.1 competence type IV pilus major pilin ComGC Machinery gene
  FDP16_RS10335 (FDP16_10795) comYB 2088484..2089518 (-) 1035 WP_256254487.1 competence type IV pilus assembly protein ComGB Machinery gene
  FDP16_RS10340 (FDP16_10800) comYA 2089448..2090389 (-) 942 WP_002896773.1 competence type IV pilus ATPase ComGA Machinery gene
  FDP16_RS10345 (FDP16_10805) - 2090519..2090899 (-) 381 WP_176799584.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36673.65 Da        Isoelectric Point: 4.6183

>NTDB_id=367243 FDP16_RS10305 WP_124765830.1 2085673..2086638(-) (comYH) [Streptococcus sanguinis strain CGMH058]
MNFEKIEQAYTLILENVQNIQNALATNFYDALIEQNGIYLDGDTDLQEVLTNDEKIRALHLTKEEWRRAYQFILMKAAQT
EPMQVNHQFTPDTIGFLITFLLDQLAHGEEADVLEIGSGTGNLAETILNHTQKKIDYLGLELDDLLIDLSASIAEVMNSK
AHFAQGDAVRPQVLKESDIIISDLPVGYYPDDSIASRYEVASPDEHTYAHHLLMEQSLKYLKPGGYAIFLAPNDLLTSAQ
APLLKKWLLAKAQFIAMITLPESIFSSSKHAKTLFVLRKQEANNIQPFIYPLRDLQDHDEMFKFRQSFQNWYKDSEIQTK
F

Nucleotide


Download         Length: 966 bp        

>NTDB_id=367243 FDP16_RS10305 WP_124765830.1 2085673..2086638(-) (comYH) [Streptococcus sanguinis strain CGMH058]
ATGAATTTTGAAAAGATAGAACAAGCTTATACTCTGATTCTCGAAAACGTCCAGAATATTCAAAACGCTCTGGCGACCAA
TTTTTACGATGCTCTGATTGAGCAGAATGGCATTTACCTAGATGGAGATACTGATTTACAAGAGGTTCTGACCAACGATG
AAAAAATCCGCGCTCTGCATTTGACCAAGGAAGAGTGGCGGAGAGCCTATCAGTTTATCCTGATGAAAGCGGCCCAGACG
GAGCCCATGCAGGTCAATCATCAATTCACTCCTGATACAATTGGTTTTCTGATTACTTTCCTGCTGGACCAGCTAGCTCA
CGGAGAGGAAGCTGATGTATTAGAAATCGGCAGTGGAACAGGAAATTTGGCTGAGACTATTCTCAATCATACCCAAAAGA
AAATAGACTACCTAGGTCTGGAGCTAGATGATTTATTAATTGACCTTTCTGCCAGCATTGCAGAGGTTATGAACTCTAAG
GCTCACTTTGCTCAGGGGGATGCAGTTCGGCCTCAGGTTCTGAAAGAGAGTGATATCATTATCAGTGATTTACCGGTCGG
TTATTATCCGGACGACAGTATCGCCTCTCGTTATGAAGTAGCTAGTCCGGATGAGCACACTTATGCCCACCATCTTCTAA
TGGAGCAATCGCTCAAATATCTAAAGCCGGGAGGATATGCTATATTTCTGGCGCCGAATGACCTCTTGACCAGCGCTCAA
GCTCCTCTGCTGAAAAAATGGCTCCTAGCCAAGGCTCAGTTTATTGCAATGATAACCTTGCCAGAGTCTATTTTCTCAAG
CAGCAAGCATGCCAAAACTCTTTTTGTCTTGAGGAAGCAAGAGGCGAATAACATTCAGCCTTTTATCTATCCTCTGAGAG
ATTTGCAGGATCATGATGAAATGTTTAAATTCCGCCAAAGTTTTCAAAACTGGTACAAAGATAGTGAAATTCAAACAAAA
TTTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1S0N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

58.73

98.131

0.576
  comYH Streptococcus mutans UA140

58.413

98.131

0.573

Multiple sequence alignment