Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   FDP16_RS10175 Genome accession   NZ_CP040798
Coordinates   2066132..2066527 (-) Length   131 a.a.
NCBI ID   WP_002928959.1    Uniprot ID   A0A7H8V354
Organism   Streptococcus sanguinis strain CGMH058     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2061132..2071527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS10155 (FDP16_10605) - 2061598..2062881 (-) 1284 WP_176799560.1 ABC transporter substrate-binding protein -
  FDP16_RS10160 (FDP16_10610) - 2062878..2063561 (-) 684 WP_002896732.1 response regulator transcription factor -
  FDP16_RS10165 (FDP16_10615) - 2063554..2064867 (-) 1314 WP_002928969.1 sensor histidine kinase -
  FDP16_RS10170 (FDP16_10620) - 2064867..2065853 (-) 987 WP_176799561.1 substrate-binding domain-containing protein -
  FDP16_RS10175 (FDP16_10625) ssbB/cilA 2066132..2066527 (-) 396 WP_002928959.1 single-stranded DNA-binding protein Machinery gene
  FDP16_RS10180 (FDP16_10630) - 2066656..2067243 (+) 588 WP_176799562.1 hypothetical protein -
  FDP16_RS10185 (FDP16_10635) - 2067333..2067692 (-) 360 WP_176799563.1 rhodanese-like domain-containing protein -
  FDP16_RS10190 (FDP16_10640) - 2067685..2068116 (-) 432 WP_176799564.1 MarR family winged helix-turn-helix transcriptional regulator -
  FDP16_RS10195 (FDP16_10645) ytpR 2068337..2068964 (-) 628 Protein_2004 YtpR family tRNA-binding protein -
  FDP16_RS10200 (FDP16_10650) - 2068961..2069297 (-) 337 Protein_2005 thioredoxin family protein -
  FDP16_RS10205 (FDP16_10655) - 2069294..2069581 (-) 288 WP_176799817.1 DUF4651 domain-containing protein -
  FDP16_RS10210 (FDP16_10660) pepA 2069752..2070816 (+) 1065 WP_176799565.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14652.50 Da        Isoelectric Point: 6.2430

>NTDB_id=367241 FDP16_RS10175 WP_002928959.1 2066132..2066527(-) (ssbB/cilA) [Streptococcus sanguinis strain CGMH058]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRPYKSQSGEREADFVNVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=367241 FDP16_RS10175 WP_002928959.1 2066132..2066527(-) (ssbB/cilA) [Streptococcus sanguinis strain CGMH058]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTACGCCTGAACTTCACAAGACTGCCAATGAAAAATCTGTGGC
CCGCGCAACGGTCGCGGTTAATCGCCCTTATAAATCTCAGAGCGGTGAGCGTGAGGCGGATTTTGTAAATGTGGTTGTCT
GGGGGCGCCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTAGATGGTGAGCTGCGGACTCGT
CGCTATGAAAAGGAGGGGGCGACTCATTATGTGACAGAGGTGCTCTGTCATAGCTTCCAGCTCCTAGAAAGTCGGGCTCA
GCGTGCCCTGCGTGAAAATAATAGCGGAGCTGACTTGGCAGATTTGGTGTTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8V354

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae D39

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae R6

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

58.929

85.496

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment