Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | FD723_RS21720 | Genome accession | NZ_CP040272 |
| Coordinates | 5258516..5259643 (-) | Length | 375 a.a. |
| NCBI ID | WP_179067208.1 | Uniprot ID | - |
| Organism | Nostoc sp. C052 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5253516..5264643
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD723_RS21700 (FD723_21605) | - | 5253778..5255082 (+) | 1305 | WP_256874893.1 | radical SAM/SPASM domain-containing protein | - |
| FD723_RS21705 (FD723_21610) | - | 5255324..5256025 (-) | 702 | WP_179067205.1 | hypothetical protein | - |
| FD723_RS21710 (FD723_21615) | - | 5256462..5257022 (-) | 561 | WP_179067206.1 | hypothetical protein | - |
| FD723_RS21715 (FD723_21620) | - | 5257159..5258382 (-) | 1224 | WP_179067207.1 | type II secretion system F family protein | - |
| FD723_RS21720 (FD723_21625) | pilT | 5258516..5259643 (-) | 1128 | WP_179067208.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FD723_RS21725 (FD723_21630) | pilB/pilB1 | 5259779..5261782 (-) | 2004 | WP_179067209.1 | GspE/PulE family protein | Machinery gene |
| FD723_RS21730 (FD723_21635) | grpE | 5262386..5263126 (+) | 741 | WP_179069228.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41055.35 Da Isoelectric Point: 7.4775
>NTDB_id=362997 FD723_RS21720 WP_179067208.1 5258516..5259643(-) (pilT) [Nostoc sp. C052]
MEMMIEDLMEQLIEMGGSDMHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKERGSYAACLRALSSKIPNFEKLGLPDIVREMTDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGTSVPPQAAGAKSGAAAKAH
MEMMIEDLMEQLIEMGGSDMHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQNWELDCSYGVKGL
ARFRVNVYKERGSYAACLRALSSKIPNFEKLGLPDIVREMTDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGTSVPPQAAGAKSGAAAKAH
Nucleotide
Download Length: 1128 bp
>NTDB_id=362997 FD723_RS21720 WP_179067208.1 5258516..5259643(-) (pilT) [Nostoc sp. C052]
ATGGAAATGATGATTGAAGACTTGATGGAGCAGTTGATTGAAATGGGTGGTTCGGATATGCATTTATCCGCAGGTTTACC
TCCCTACTTCCGCATCAGTGGCAAACTCACCCCCATAGGTGAACATGTATTAACAGCCGATCAGTGTCAAAGGCTAATTT
TTAGTATGCTTAACAACACCCAGCGTAAAACCTTAGAGCAGAACTGGGAGTTGGATTGTTCTTATGGTGTTAAAGGTTTA
GCTCGCTTTCGGGTCAATGTCTATAAAGAACGTGGTTCTTATGCTGCTTGTTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATTGTAAGGGAAATGACAGATAAGCCCAGAGGGCTAATTCTGGTGACAGGCCCTA
CAGGTTCCGGCAAGACAACGACCCTAGCGGCAATGATTGACTTGATTAACCGCACCAAAGCAGAGCATATTTTGACGGTG
GAAGACCCAATTGAATTTGTCTACGAACCAATTAAAAGTTTGGTTCACCAACGACAACTAGGTGAAGATACTAAAAGTTT
TGCCAATGCTTTGAAAGCAGCTTTGCGGGAAGATCCAGATATTGTTCTGGTAGGAGAAATGCGCGATTTAGAAACAATTT
CTTTGGCGATTTCCGCAGCAGAAACAGGACACTTAGTATTTGGCACGCTACACACCAGTTCCGCGGCACAAACGGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAGGTGCGGGTGCAGTTGTCTAACTCTTTAGTGGCAGTATTTAG
CCAAACCTTGGTTTCCAAGAAAAACCCTAAACCCGGTGAATATGGTCGGGTAATGGCTCAAGAAATTCTGATTGTTACTC
CTGCTATTTCTAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCTATTCAAACTGGTGGCAAATTGGGAATG
CAAACTCTAGAGAAGGTTTTAGCCGATTTTTACAAAGCAGGAACCATTTCCTTTGAAGCGGCGATGTCTAAGACTTCTAA
ACCAGATGAAATCCAACGTCTCATCGGTACTTCTGTACCACCACAAGCAGCAGGTGCGAAATCAGGTGCGGCTGCCAAAG
CGCATTAA
ATGGAAATGATGATTGAAGACTTGATGGAGCAGTTGATTGAAATGGGTGGTTCGGATATGCATTTATCCGCAGGTTTACC
TCCCTACTTCCGCATCAGTGGCAAACTCACCCCCATAGGTGAACATGTATTAACAGCCGATCAGTGTCAAAGGCTAATTT
TTAGTATGCTTAACAACACCCAGCGTAAAACCTTAGAGCAGAACTGGGAGTTGGATTGTTCTTATGGTGTTAAAGGTTTA
GCTCGCTTTCGGGTCAATGTCTATAAAGAACGTGGTTCTTATGCTGCTTGTTTACGGGCATTAAGTTCTAAGATTCCTAA
CTTTGAAAAATTAGGTTTGCCAGATATTGTAAGGGAAATGACAGATAAGCCCAGAGGGCTAATTCTGGTGACAGGCCCTA
CAGGTTCCGGCAAGACAACGACCCTAGCGGCAATGATTGACTTGATTAACCGCACCAAAGCAGAGCATATTTTGACGGTG
GAAGACCCAATTGAATTTGTCTACGAACCAATTAAAAGTTTGGTTCACCAACGACAACTAGGTGAAGATACTAAAAGTTT
TGCCAATGCTTTGAAAGCAGCTTTGCGGGAAGATCCAGATATTGTTCTGGTAGGAGAAATGCGCGATTTAGAAACAATTT
CTTTGGCGATTTCCGCAGCAGAAACAGGACACTTAGTATTTGGCACGCTACACACCAGTTCCGCGGCACAAACGGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAGGTGCGGGTGCAGTTGTCTAACTCTTTAGTGGCAGTATTTAG
CCAAACCTTGGTTTCCAAGAAAAACCCTAAACCCGGTGAATATGGTCGGGTAATGGCTCAAGAAATTCTGATTGTTACTC
CTGCTATTTCTAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCTATTCAAACTGGTGGCAAATTGGGAATG
CAAACTCTAGAGAAGGTTTTAGCCGATTTTTACAAAGCAGGAACCATTTCCTTTGAAGCGGCGATGTCTAAGACTTCTAA
ACCAGATGAAATCCAACGTCTCATCGGTACTTCTGTACCACCACAAGCAGCAGGTGCGAAATCAGGTGCGGCTGCCAAAG
CGCATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.467 |
92.533 |
0.504 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.868 |
93.067 |
0.501 |
| pilT | Acinetobacter baylyi ADP1 |
52.738 |
92.533 |
0.488 |
| pilT | Legionella pneumophila strain Lp02 |
52.738 |
92.533 |
0.488 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.738 |
92.533 |
0.488 |
| pilT | Acinetobacter baumannii D1279779 |
51.873 |
92.533 |
0.48 |
| pilT | Acinetobacter nosocomialis M2 |
51.873 |
92.533 |
0.48 |
| pilT | Acinetobacter baumannii strain A118 |
51.873 |
92.533 |
0.48 |
| pilT | Neisseria gonorrhoeae MS11 |
50.737 |
90.4 |
0.459 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.857 |
93.333 |
0.456 |
| pilT | Neisseria meningitidis 8013 |
50.442 |
90.4 |
0.456 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.415 |
91.2 |
0.451 |
| pilT | Vibrio cholerae strain A1552 |
49.415 |
91.2 |
0.451 |