Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   FD723_RS21725 Genome accession   NZ_CP040272
Coordinates   5259779..5261782 (-) Length   667 a.a.
NCBI ID   WP_179067209.1    Uniprot ID   -
Organism   Nostoc sp. C052     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5254779..5266782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD723_RS21705 (FD723_21610) - 5255324..5256025 (-) 702 WP_179067205.1 hypothetical protein -
  FD723_RS21710 (FD723_21615) - 5256462..5257022 (-) 561 WP_179067206.1 hypothetical protein -
  FD723_RS21715 (FD723_21620) - 5257159..5258382 (-) 1224 WP_179067207.1 type II secretion system F family protein -
  FD723_RS21720 (FD723_21625) pilT 5258516..5259643 (-) 1128 WP_179067208.1 type IV pilus twitching motility protein PilT Machinery gene
  FD723_RS21725 (FD723_21630) pilB/pilB1 5259779..5261782 (-) 2004 WP_179067209.1 GspE/PulE family protein Machinery gene
  FD723_RS21730 (FD723_21635) grpE 5262386..5263126 (+) 741 WP_179069228.1 nucleotide exchange factor GrpE -
  FD723_RS21735 (FD723_21640) dnaK 5263352..5265310 (+) 1959 WP_179067210.1 molecular chaperone DnaK -
  FD723_RS21740 (FD723_21645) - 5265499..5265714 (-) 216 WP_179067211.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 74349.24 Da        Isoelectric Point: 5.3242

>NTDB_id=362998 FD723_RS21725 WP_179067209.1 5259779..5261782(-) (pilB/pilB1) [Nostoc sp. C052]
MNSSPQRRSTALTTRTEFSPFGNKLVQSGYVNTEQMRQALIESRKSGRPLTEVLESITGQQLSPELLRQYKKQQLFELKI
LYGVEFLDPEVNSVGNTMMGNLIETLIPIDICRRHRLVPLSKHEDQTPPSVLVAMVAPDNLEASDDLNRILRPQGLALQR
MVITQEDYQQLINQYLDEMAVKQKHLEQEKFTDINQDLENLGNLDLSDAPEEMEADLGAAMKGAEDAPVINLVNRILAKA
LHEGVSDIHIEPQEENLRIRFRKDGVLKEAFDPLPKKIIPAVTARFKIISNLDIAERRLPQDGRIRRLFEGRKVDFRVNT
LPSRYGEKVVLRILDNSSTQLGLDKLITDPETLHIVQDMVSRPFGLILVTGPTGSGKTTSLYSALSEKNDPGINISTVED
PIEYSLPGITQVQVIREKGLDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARLGEM
GIEPFMVSSSLIGVLAQRLVRRVCSECRIPYTPTTEELARYGLSASSDVGVTFYKANTLTLDAIAEAKAKNQLCPKCNGG
GYKGRCGVYEVMRVTENLQTLINEDAPTERIKEVAIEEGMKTLLAYSLDLVRLGSTTLEEVERVTFTDTGLEAELKAKRK
TGLTCRSCQATLKQEWLDCPYCMTARF

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=362998 FD723_RS21725 WP_179067209.1 5259779..5261782(-) (pilB/pilB1) [Nostoc sp. C052]
ATGAACTCGTCACCACAACGGCGCAGTACCGCTCTAACTACCAGAACAGAGTTTTCGCCTTTTGGCAACAAGCTAGTGCA
ATCTGGCTATGTCAATACCGAACAGATGAGGCAGGCACTAATTGAAAGCCGCAAATCTGGCAGACCCTTAACGGAAGTAC
TAGAGTCAATCACTGGGCAACAACTATCGCCTGAGTTGCTCAGGCAATATAAAAAACAGCAGCTATTTGAACTTAAAATC
CTATACGGAGTTGAATTCCTCGATCCTGAAGTCAACTCCGTTGGCAATACGATGATGGGGAATCTGATTGAAACCCTAAT
CCCAATCGATATCTGTCGTCGCCATCGTTTAGTACCACTGTCGAAACACGAAGACCAAACCCCACCCTCAGTTTTAGTGG
CAATGGTCGCTCCAGATAATCTAGAGGCTTCTGATGACCTGAACCGCATCTTGCGCCCCCAAGGTTTGGCCTTGCAGCGG
ATGGTGATTACCCAGGAAGACTACCAACAGCTAATCAACCAATACTTGGATGAAATGGCTGTTAAGCAGAAGCACCTGGA
ACAAGAAAAGTTTACAGATATTAATCAGGATTTAGAAAATCTCGGAAATCTCGATCTTTCCGACGCTCCAGAAGAAATGG
AGGCTGATCTAGGGGCAGCGATGAAGGGTGCAGAGGATGCCCCAGTCATCAACCTAGTTAATAGAATTCTGGCTAAAGCC
TTGCATGAGGGCGTTTCTGACATTCATATCGAACCGCAAGAAGAAAATTTACGCATTCGCTTTCGGAAGGATGGCGTACT
GAAGGAAGCTTTCGATCCCCTACCGAAAAAAATTATTCCGGCGGTGACAGCCCGATTTAAAATCATCTCCAATCTAGACA
TTGCGGAACGCCGTCTACCCCAAGATGGACGTATCCGACGGCTGTTTGAGGGACGCAAAGTAGATTTCCGGGTGAATACC
TTGCCCAGTCGCTACGGGGAAAAAGTGGTGCTGCGGATTTTGGATAATTCCTCCACCCAACTGGGATTAGATAAGTTAAT
TACCGATCCAGAGACTTTACATATTGTCCAGGATATGGTTAGCCGTCCTTTCGGTCTAATTTTGGTAACTGGGCCAACTG
GTTCTGGGAAAACAACCTCGCTGTATTCTGCACTATCAGAAAAGAATGATCCCGGAATTAATATCAGTACTGTAGAAGAC
CCAATTGAGTATAGTCTTCCAGGGATTACTCAAGTACAGGTGATTCGGGAAAAAGGGCTGGATTTTGCTACCGCGTTGCG
GGCTTTCTTACGTCAAGATCCAGATGTGCTGCTGGTGGGTGAAACGCGGGATAAGGAAACGGCAAAAACAGCGATTGAAG
CTGCCTTGACTGGTCACTTAGTATTAACTACCTTACATACCAATGATGCCCCAGGCGCGATCGCACGTCTGGGAGAAATG
GGGATTGAGCCTTTCATGGTTTCTAGTTCCCTAATTGGCGTTCTAGCTCAACGTCTGGTGCGGCGTGTCTGTTCTGAATG
TCGTATTCCCTACACTCCTACAACCGAGGAACTAGCTCGTTATGGTCTATCAGCTTCCTCTGATGTGGGAGTCACCTTCT
ATAAGGCTAACACCTTGACATTAGATGCGATCGCCGAAGCCAAAGCCAAAAATCAGCTTTGCCCAAAATGTAATGGCGGC
GGCTACAAAGGGCGTTGTGGTGTTTATGAAGTTATGCGAGTCACCGAAAATCTCCAAACTCTCATTAACGAAGATGCACC
CACAGAACGCATTAAGGAAGTGGCAATAGAAGAGGGGATGAAAACCTTGCTGGCTTACAGTTTAGATTTAGTGCGCCTTG
GTTCTACCACCCTAGAAGAAGTAGAACGGGTGACGTTTACTGATACTGGTTTGGAAGCTGAATTAAAAGCCAAACGCAAG
ACTGGACTTACCTGCCGGAGTTGCCAGGCCACATTGAAACAAGAATGGTTGGATTGTCCTTACTGTATGACAGCTCGGTT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(235-502)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.415

99.1

0.658

Multiple sequence alignment