Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | E8M06_RS00775 | Genome accession | NZ_CP039462 |
| Coordinates | 125747..126028 (+) | Length | 93 a.a. |
| NCBI ID | WP_105145695.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain WUSS351 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 120747..131028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E8M06_RS00755 (E8M06_00755) | - | 122410..122775 (+) | 366 | WP_024395451.1 | DUF1033 family protein | - |
| E8M06_RS00760 (E8M06_00760) | - | 122810..123760 (-) | 951 | WP_136581014.1 | S66 peptidase family protein | - |
| E8M06_RS00765 (E8M06_00765) | comYA | 123846..124796 (+) | 951 | WP_136581015.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| E8M06_RS00770 (E8M06_00770) | comYB | 124708..125745 (+) | 1038 | WP_247904444.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| E8M06_RS00775 (E8M06_00775) | comYC | 125747..126028 (+) | 282 | WP_105145695.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| E8M06_RS00780 (E8M06_00780) | comGD | 126009..126416 (+) | 408 | WP_136581016.1 | competence type IV pilus minor pilin ComGD | - |
| E8M06_RS00785 (E8M06_00785) | comYE | 126388..126681 (+) | 294 | WP_044680789.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| E8M06_RS00790 (E8M06_00790) | comGF/cglF | 126668..127102 (+) | 435 | WP_044687018.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| E8M06_RS00795 (E8M06_00795) | comGG | 127080..127490 (+) | 411 | WP_024395444.1 | competence type IV pilus minor pilin ComGG | - |
| E8M06_RS00800 (E8M06_00800) | comYH | 127547..128500 (+) | 954 | WP_044778430.1 | class I SAM-dependent methyltransferase | Machinery gene |
| E8M06_RS00805 (E8M06_00805) | - | 128550..129737 (+) | 1188 | WP_014637319.1 | acetate kinase | - |
| E8M06_RS00810 (E8M06_00810) | - | 130052..130603 (+) | 552 | WP_136581017.1 | folate family ECF transporter S component | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10452.35 Da Isoelectric Point: 5.8785
>NTDB_id=358829 E8M06_RS00775 WP_105145695.1 125747..126028(+) (comYC) [Streptococcus suis strain WUSS351]
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSKQKDAVQEKGNAAVVKVVESQMELYELEHDEEATVEDLQAKGYI
TEKQAKQYATAKK
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSKQKDAVQEKGNAAVVKVVESQMELYELEHDEEATVEDLQAKGYI
TEKQAKQYATAKK
Nucleotide
Download Length: 282 bp
>NTDB_id=358829 E8M06_RS00775 WP_105145695.1 125747..126028(+) (comYC) [Streptococcus suis strain WUSS351]
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTAGTCGTTTTGGGGATCATTAGCCTGCT
CTTGCTCTTATTTGTGCCAAATTTGAGCAAACAAAAGGATGCTGTTCAAGAGAAAGGAAATGCTGCCGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACAGTGGAGGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTAGTCGTTTTGGGGATCATTAGCCTGCT
CTTGCTCTTATTTGTGCCAAATTTGAGCAAACAAAAGGATGCTGTTCAAGAGAAAGGAAATGCTGCCGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACAGTGGAGGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
94.624 |
100 |
0.946 |
| comGC/cglC | Streptococcus pneumoniae R6 |
69.318 |
94.624 |
0.656 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
69.318 |
94.624 |
0.656 |
| comGC/cglC | Streptococcus pneumoniae D39 |
69.318 |
94.624 |
0.656 |
| comGC/cglC | Streptococcus mitis SK321 |
70.588 |
91.398 |
0.645 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
70.588 |
91.398 |
0.645 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
72.84 |
87.097 |
0.634 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
65.169 |
95.699 |
0.624 |
| comYC | Streptococcus mutans UA140 |
62.5 |
94.624 |
0.591 |
| comYC | Streptococcus mutans UA159 |
62.5 |
94.624 |
0.591 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
57.955 |
94.624 |
0.548 |
| comGC | Staphylococcus aureus MW2 |
51.282 |
83.871 |
0.43 |
| comGC | Staphylococcus aureus N315 |
51.282 |
83.871 |
0.43 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.667 |
80.645 |
0.376 |