Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   E8M06_RS00785 Genome accession   NZ_CP039462
Coordinates   126388..126681 (+) Length   97 a.a.
NCBI ID   WP_044680789.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121388..131681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS00755 (E8M06_00755) - 122410..122775 (+) 366 WP_024395451.1 DUF1033 family protein -
  E8M06_RS00760 (E8M06_00760) - 122810..123760 (-) 951 WP_136581014.1 S66 peptidase family protein -
  E8M06_RS00765 (E8M06_00765) comYA 123846..124796 (+) 951 WP_136581015.1 competence type IV pilus ATPase ComGA Machinery gene
  E8M06_RS00770 (E8M06_00770) comYB 124708..125745 (+) 1038 WP_247904444.1 competence type IV pilus assembly protein ComGB Machinery gene
  E8M06_RS00775 (E8M06_00775) comYC 125747..126028 (+) 282 WP_105145695.1 competence type IV pilus major pilin ComGC Machinery gene
  E8M06_RS00780 (E8M06_00780) comGD 126009..126416 (+) 408 WP_136581016.1 competence type IV pilus minor pilin ComGD -
  E8M06_RS00785 (E8M06_00785) comYE 126388..126681 (+) 294 WP_044680789.1 competence type IV pilus minor pilin ComGE Machinery gene
  E8M06_RS00790 (E8M06_00790) comGF/cglF 126668..127102 (+) 435 WP_044687018.1 competence type IV pilus minor pilin ComGF Machinery gene
  E8M06_RS00795 (E8M06_00795) comGG 127080..127490 (+) 411 WP_024395444.1 competence type IV pilus minor pilin ComGG -
  E8M06_RS00800 (E8M06_00800) comYH 127547..128500 (+) 954 WP_044778430.1 class I SAM-dependent methyltransferase Machinery gene
  E8M06_RS00805 (E8M06_00805) - 128550..129737 (+) 1188 WP_014637319.1 acetate kinase -
  E8M06_RS00810 (E8M06_00810) - 130052..130603 (+) 552 WP_136581017.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10755.67 Da        Isoelectric Point: 10.2089

>NTDB_id=358830 E8M06_RS00785 WP_044680789.1 126388..126681(+) (comYE) [Streptococcus suis strain WUSS351]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELERQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=358830 E8M06_RS00785 WP_044680789.1 126388..126681(+) (comYE) [Streptococcus suis strain WUSS351]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCTGGTCGCAGGCGACAGGCTTGGGAATTGGAACGACAGGAGGTTCTCAATC
TAGCTCAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAAATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

100

0.546
  comYE Streptococcus mutans UA159

54.639

100

0.546
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381

Multiple sequence alignment