Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | E5843_RS11900 | Genome accession | NZ_CP039383 |
| Coordinates | 2565291..2565743 (+) | Length | 150 a.a. |
| NCBI ID | WP_141066024.1 | Uniprot ID | - |
| Organism | Luteimonas yindakuii strain S-1072 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2560291..2570743
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5843_RS11885 (E5843_12430) | - | 2561310..2562917 (+) | 1608 | WP_244240883.1 | HAMP domain-containing sensor histidine kinase | - |
| E5843_RS11890 (E5843_12435) | pilR | 2563124..2564569 (+) | 1446 | WP_141066022.1 | sigma-54 dependent transcriptional regulator | Regulator |
| E5843_RS11895 (E5843_14615) | - | 2564811..2565026 (+) | 216 | WP_141066023.1 | hypothetical protein | - |
| E5843_RS11900 (E5843_12440) | pilA2 | 2565291..2565743 (+) | 453 | WP_141066024.1 | pilin | Machinery gene |
| E5843_RS11905 (E5843_12445) | - | 2565805..2566923 (+) | 1119 | WP_141066025.1 | hypothetical protein | - |
| E5843_RS11910 (E5843_12450) | pilB | 2567290..2569010 (+) | 1721 | Protein_2315 | type IV-A pilus assembly ATPase PilB | - |
| E5843_RS11915 (E5843_12455) | pilC | 2569281..2570552 (+) | 1272 | WP_136412748.1 | type II secretion system F family protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15270.71 Da Isoelectric Point: 8.5202
>NTDB_id=358410 E5843_RS11900 WP_141066024.1 2565291..2565743(+) (pilA2) [Luteimonas yindakuii strain S-1072]
MKKMQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVAAAPAKLAVAETAQSRGILATAVTDNALAGITSQQ
TTNVASVTVANGVITVVTRATGATVEPTLVFTPTQADLNAPITWVCTHSTGEAKHVPASCRSSSAAPAGP
MKKMQKGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVAAAPAKLAVAETAQSRGILATAVTDNALAGITSQQ
TTNVASVTVANGVITVVTRATGATVEPTLVFTPTQADLNAPITWVCTHSTGEAKHVPASCRSSSAAPAGP
Nucleotide
Download Length: 453 bp
>NTDB_id=358410 E5843_RS11900 WP_141066024.1 2565291..2565743(+) (pilA2) [Luteimonas yindakuii strain S-1072]
ATGAAGAAGATGCAGAAGGGCTTCACGCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCTTGGCCGCTATCGC
GCTGCCGGCTTATCAGGACTACACCATCCGCGCTAAGGTCAGTGAAGGCATCGTTGCGGCAGCACCGGCAAAGCTCGCGG
TTGCTGAGACCGCTCAGTCAAGGGGCATCCTTGCGACGGCCGTTACGGATAATGCGCTCGCCGGCATCACGTCGCAGCAG
ACGACGAACGTTGCTTCGGTGACGGTAGCGAACGGTGTGATCACGGTTGTGACGCGGGCCACGGGCGCGACGGTTGAGCC
CACCCTCGTCTTCACGCCCACCCAGGCCGATCTCAACGCGCCGATTACCTGGGTCTGCACCCACAGCACGGGCGAGGCGA
AGCACGTGCCTGCGTCCTGCCGTAGCTCCTCCGCAGCTCCCGCAGGCCCGTAA
ATGAAGAAGATGCAGAAGGGCTTCACGCTGATCGAACTGATGATCGTCGTCGCGATCATCGCCATCTTGGCCGCTATCGC
GCTGCCGGCTTATCAGGACTACACCATCCGCGCTAAGGTCAGTGAAGGCATCGTTGCGGCAGCACCGGCAAAGCTCGCGG
TTGCTGAGACCGCTCAGTCAAGGGGCATCCTTGCGACGGCCGTTACGGATAATGCGCTCGCCGGCATCACGTCGCAGCAG
ACGACGAACGTTGCTTCGGTGACGGTAGCGAACGGTGTGATCACGGTTGTGACGCGGGCCACGGGCGCGACGGTTGAGCC
CACCCTCGTCTTCACGCCCACCCAGGCCGATCTCAACGCGCCGATTACCTGGGTCTGCACCCACAGCACGGGCGAGGCGA
AGCACGTGCCTGCGTCCTGCCGTAGCTCCTCCGCAGCTCCCGCAGGCCCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
57.554 |
92.667 |
0.533 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
56.115 |
92.667 |
0.52 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
43.373 |
100 |
0.48 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.667 |
100 |
0.467 |
| comP | Acinetobacter baylyi ADP1 |
46 |
100 |
0.46 |
| pilA | Haemophilus influenzae Rd KW20 |
42.384 |
100 |
0.427 |
| pilE | Neisseria gonorrhoeae MS11 |
38.095 |
100 |
0.427 |
| pilA | Haemophilus influenzae 86-028NP |
43.151 |
97.333 |
0.42 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.869 |
100 |
0.407 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40 |
100 |
0.4 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.135 |
94 |
0.387 |