Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E5843_RS11890 Genome accession   NZ_CP039383
Coordinates   2563124..2564569 (+) Length   481 a.a.
NCBI ID   WP_141066022.1    Uniprot ID   -
Organism   Luteimonas yindakuii strain S-1072     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558124..2569569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5843_RS11875 (E5843_12420) sucD 2558718..2559590 (-) 873 WP_134674135.1 succinate--CoA ligase subunit alpha -
  E5843_RS11880 (E5843_12425) sucC 2559728..2560888 (-) 1161 WP_134674136.1 ADP-forming succinate--CoA ligase subunit beta -
  E5843_RS11885 (E5843_12430) - 2561310..2562917 (+) 1608 WP_244240883.1 HAMP domain-containing sensor histidine kinase -
  E5843_RS11890 (E5843_12435) pilR 2563124..2564569 (+) 1446 WP_141066022.1 sigma-54 dependent transcriptional regulator Regulator
  E5843_RS11895 (E5843_14615) - 2564811..2565026 (+) 216 WP_141066023.1 hypothetical protein -
  E5843_RS11900 (E5843_12440) pilA2 2565291..2565743 (+) 453 WP_141066024.1 pilin Machinery gene
  E5843_RS11905 (E5843_12445) - 2565805..2566923 (+) 1119 WP_141066025.1 hypothetical protein -
  E5843_RS11910 (E5843_12450) pilB 2567290..2569010 (+) 1721 Protein_2315 type IV-A pilus assembly ATPase PilB -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 51841.29 Da        Isoelectric Point: 6.6439

>NTDB_id=358409 E5843_RS11890 WP_141066022.1 2563124..2564569(+) (pilR) [Luteimonas yindakuii strain S-1072]
MTTTSEQRSVLIVDDEHDIRELLVLTLGRMGLRTDTAPTLTAARELLGSGSYELCLTDMRLPDGSGLELVAEITTRFPRT
PVAVITAYGNVEAAVEALKAGAFDFVSKPVDIHMLRGLVRQALDLNTRPAPSASEEPAGRLFGESDAMVDLRRTVAKVAR
SQAPVHISGESGTGKELVARTIHGQSARAAGPFVPVNCGAIPNELMESEFFGHRKGSFTGAHADKPGLFQTADGGTLFLD
EVAELPLSMQVKLLRAIQEKTIRPVGASIEVPVDVRILSATHKDLAQLVDLGSFRHDLYYRINVIGLHVPPLRERTGDLK
LLSTGILQRLAQAMRRPTPVLAPAALAALEEYPFPGNVRELENILERALALAEGDLIQPDDLHLPRGQRPGAHLALGAAN
RGDTAPGQSPGGMHAASTPDPRTLSPYDTASTALPSYIEEIERAAIQQALQENRYNKTKTAAALGITFRALRYKLKKLGI
D

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=358409 E5843_RS11890 WP_141066022.1 2563124..2564569(+) (pilR) [Luteimonas yindakuii strain S-1072]
GTGACCACGACCAGCGAACAACGCTCCGTACTGATCGTCGACGACGAACACGACATCCGCGAGCTGCTGGTGCTGACGCT
GGGGCGGATGGGCCTGCGCACCGATACCGCGCCCACCCTCACCGCCGCCCGCGAACTGCTGGGTAGCGGCAGCTACGAGC
TGTGCCTGACAGACATGCGCCTGCCGGACGGCTCCGGCCTCGAGCTGGTGGCCGAGATCACCACCCGCTTCCCGCGCACC
CCGGTCGCGGTGATCACTGCCTACGGCAACGTCGAGGCCGCGGTGGAAGCGCTGAAGGCGGGCGCGTTCGATTTCGTCAG
CAAGCCGGTCGACATCCACATGCTGCGCGGGCTGGTGCGCCAGGCGCTGGACCTCAACACGCGCCCCGCCCCTTCGGCCA
GCGAGGAACCCGCCGGGCGCCTGTTCGGCGAATCCGACGCCATGGTCGACCTGCGCCGCACGGTGGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTGCATATCAGTGGCGAATCCGGCACCGGCAAGGAGCTGGTTGCCCGCACCATCCACGGGCAGAGCGC
ACGGGCGGCGGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCAACGAGCTGATGGAAAGCGAATTCTTCGGCCACA
GGAAGGGCAGCTTCACCGGCGCCCACGCAGACAAGCCCGGCCTGTTCCAGACCGCCGACGGCGGCACCCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCACTGTCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGACCATCCGCCCGGTCGGCGC
CTCGATCGAGGTGCCGGTGGACGTGCGCATCCTTTCGGCCACCCACAAGGACCTCGCCCAGCTGGTCGACCTCGGCAGCT
TCCGCCACGACCTCTACTACCGCATCAATGTCATCGGCCTGCACGTGCCGCCGCTGCGCGAACGCACCGGCGACCTCAAG
CTGTTGTCCACCGGCATCCTGCAACGCCTCGCCCAGGCCATGCGCCGCCCCACCCCTGTACTGGCCCCCGCCGCGCTCGC
GGCGCTGGAGGAGTACCCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCACTGGCCGAGG
GCGACCTCATCCAGCCCGACGACCTGCACCTGCCCCGCGGCCAGCGTCCCGGCGCCCACCTCGCCCTCGGCGCCGCGAAC
CGCGGTGACACCGCACCCGGCCAGTCACCCGGCGGCATGCACGCGGCATCCACGCCCGACCCGCGCACCCTCAGCCCCTA
CGACACCGCTTCCACCGCGCTGCCCTCGTACATCGAGGAAATCGAACGCGCTGCCATCCAGCAGGCCCTGCAGGAAAACC
GCTACAACAAGACCAAGACCGCGGCGGCGCTGGGCATCACCTTCCGGGCGCTGCGGTACAAGCTGAAGAAATTGGGGATT
GATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(438-478)

Response regulator receiver domain (Response_reg)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.664

98.96

0.59
  pilR Acinetobacter baumannii strain A118

47.808

99.584

0.476

Multiple sequence alignment