Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E5843_RS11915 Genome accession   NZ_CP039383
Coordinates   2569281..2570552 (+) Length   423 a.a.
NCBI ID   WP_136412748.1    Uniprot ID   -
Organism   Luteimonas yindakuii strain S-1072     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2564281..2575552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5843_RS11895 (E5843_14615) - 2564811..2565026 (+) 216 WP_141066023.1 hypothetical protein -
  E5843_RS11900 (E5843_12440) pilA2 2565291..2565743 (+) 453 WP_141066024.1 pilin Machinery gene
  E5843_RS11905 (E5843_12445) - 2565805..2566923 (+) 1119 WP_141066025.1 hypothetical protein -
  E5843_RS11910 (E5843_12450) pilB 2567290..2569010 (+) 1721 Protein_2315 type IV-A pilus assembly ATPase PilB -
  E5843_RS11915 (E5843_12455) pilC 2569281..2570552 (+) 1272 WP_136412748.1 type II secretion system F family protein Machinery gene
  E5843_RS11920 (E5843_12460) pilD 2570590..2571456 (+) 867 WP_136412749.1 A24 family peptidase Machinery gene
  E5843_RS11925 (E5843_12465) - 2571631..2571930 (-) 300 WP_136412750.1 hypothetical protein -
  E5843_RS11930 (E5843_12470) xth 2572086..2572910 (+) 825 WP_134674144.1 exodeoxyribonuclease III -
  E5843_RS11935 (E5843_12475) - 2572984..2573160 (+) 177 WP_136412752.1 DUF3606 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45917.19 Da        Isoelectric Point: 10.0967

>NTDB_id=358411 E5843_RS11915 WP_136412748.1 2569281..2570552(+) (pilC) [Luteimonas yindakuii strain S-1072]
MSVTRSAAKSAARKPVSPGRQGVTLETFVWEGTDKRGKKMKGEQAARNASLLKAELRRQGISPGVVKPKKKPLFGGAGKN
ITPKDIAVFSRQIATMIKSGVPIVQALEIIGSGHKNPKMADMINAIRVDLENGTPFAEALGKYPVQFDELTRNLVKVGES
AGVLETVLDSIATYKENIETLKGKIKKALFYPATVIAVALIVSAILLIFVVPQFESVFANFGAELPAFTQMIVAASRFMV
AYWWMILAIVVAAIVSFVYSYKRSTALQHTVDRWMLKIPVIGQILHNSAIARFSRTLATTFKAGVPLVEALESVAGATGS
TVYEKATWLIRDDVSVGYPMNLAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADFYEEEVNNAVDALSSLIEPMIMIF
IGVVVGGMVIGMYLPIFKLAAVV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=358411 E5843_RS11915 WP_136412748.1 2569281..2570552(+) (pilC) [Luteimonas yindakuii strain S-1072]
ATGTCCGTGACGCGATCCGCCGCCAAGTCCGCGGCCCGCAAGCCTGTGTCACCCGGCCGCCAGGGCGTGACCCTGGAGAC
GTTTGTCTGGGAGGGCACCGACAAGCGCGGCAAGAAGATGAAGGGCGAGCAGGCAGCGCGCAATGCCAGCCTGCTGAAGG
CGGAACTGCGCAGGCAGGGCATCAGCCCCGGGGTGGTCAAGCCGAAGAAGAAGCCGCTGTTCGGCGGCGCCGGCAAGAAC
ATCACGCCGAAGGACATCGCGGTCTTCAGCCGCCAGATCGCTACGATGATCAAGTCCGGCGTGCCGATCGTGCAGGCCCT
GGAAATCATCGGCAGCGGGCACAAGAACCCGAAGATGGCCGACATGATCAACGCCATCCGGGTGGACCTCGAGAACGGCA
CGCCGTTCGCCGAAGCGCTGGGCAAGTACCCGGTGCAGTTCGACGAACTGACGCGCAACCTGGTCAAGGTGGGCGAGTCC
GCCGGTGTACTGGAAACGGTCCTGGACAGCATTGCCACCTACAAGGAGAACATCGAAACCCTCAAGGGCAAGATCAAGAA
GGCGCTGTTCTATCCGGCGACGGTCATCGCCGTGGCCCTAATCGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGT
TCGAATCGGTGTTCGCCAACTTCGGCGCGGAATTGCCGGCGTTTACCCAGATGATCGTGGCCGCCAGCCGCTTCATGGTG
GCGTACTGGTGGATGATTTTGGCGATCGTGGTCGCCGCGATTGTCAGCTTTGTCTATTCCTACAAGCGGTCGACCGCGTT
GCAGCACACCGTCGACCGCTGGATGCTGAAGATCCCGGTGATCGGCCAGATCCTGCACAACTCGGCGATCGCGCGTTTCA
GCCGCACGCTGGCGACGACCTTCAAGGCCGGCGTGCCGCTGGTGGAAGCGCTGGAGTCCGTGGCCGGCGCCACCGGCAGC
ACCGTCTACGAGAAGGCCACCTGGCTGATCCGCGACGACGTCTCCGTCGGCTACCCGATGAACCTGGCGATGAAGCAGGT
CAACCTGTTTCCGCACATGGTGGTGCAGATGACCGCGATCGGCGAGGAGGCGGGTGCGCTCGACACCATGCTGTTCAAGG
TGGCGGACTTCTACGAGGAAGAAGTCAACAACGCGGTCGATGCGCTGTCGAGCCTGATCGAGCCGATGATCATGATCTTC
ATCGGCGTGGTCGTCGGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCGGCCGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.14

94.326

0.53
  pilC Pseudomonas stutzeri DSM 10701

55.051

93.617

0.515
  pilC Acinetobacter baylyi ADP1

51.889

93.853

0.487
  pilC Acinetobacter baumannii D1279779

51.508

94.09

0.485
  pilG Neisseria gonorrhoeae MS11

43.829

93.853

0.411
  pilG Neisseria meningitidis 44/76-A

43.829

93.853

0.411
  pilC Vibrio cholerae strain A1552

41.191

95.272

0.392
  pilC Vibrio campbellii strain DS40M4

40.602

94.326

0.383
  pilC Thermus thermophilus HB27

38.155

94.799

0.362

Multiple sequence alignment