Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EWA66_RS06675 | Genome accession | NZ_CP035680 |
| Coordinates | 1398533..1398988 (-) | Length | 151 a.a. |
| NCBI ID | WP_039439519.1 | Uniprot ID | - |
| Organism | Vibrio navarrensis strain 08-2462 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1393533..1403988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWA66_RS06655 | coaE | 1393976..1394584 (-) | 609 | WP_039439514.1 | dephospho-CoA kinase | - |
| EWA66_RS06660 | pilD | 1394586..1395455 (-) | 870 | WP_039439602.1 | prepilin peptidase | Machinery gene |
| EWA66_RS06665 | pilC | 1395595..1396821 (-) | 1227 | WP_039439516.1 | type II secretion system F family protein | Machinery gene |
| EWA66_RS06670 | pilB | 1396844..1398532 (-) | 1689 | WP_039439517.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EWA66_RS06675 | pilA | 1398533..1398988 (-) | 456 | WP_039439519.1 | pilin | Machinery gene |
| EWA66_RS06680 | nadC | 1399204..1400091 (-) | 888 | WP_039439520.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EWA66_RS06685 | ampD | 1400184..1400747 (+) | 564 | WP_039439522.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EWA66_RS06690 | pdhR | 1401157..1401927 (+) | 771 | WP_039430445.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 15599.87 Da Isoelectric Point: 8.4863
>NTDB_id=343561 EWA66_RS06675 WP_039439519.1 1398533..1398988(-) (pilA) [Vibrio navarrensis strain 08-2462]
MKKHNRLIKQQGFTLIELMIVVAIIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPATGKEGELGV
PSTIPSGTIAFATTGSAATGTITFTFKASGVSNLITGKSFALARDGSGTWTCDGTSSDAVTDDLLPKNCRP
MKKHNRLIKQQGFTLIELMIVVAIIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPATGKEGELGV
PSTIPSGTIAFATTGSAATGTITFTFKASGVSNLITGKSFALARDGSGTWTCDGTSSDAVTDDLLPKNCRP
Nucleotide
Download Length: 456 bp
>NTDB_id=343561 EWA66_RS06675 WP_039439519.1 1398533..1398988(-) (pilA) [Vibrio navarrensis strain 08-2462]
ATGAAAAAGCATAACCGACTAATAAAACAGCAGGGCTTTACCCTGATTGAATTAATGATAGTGGTGGCAATTATTGGTGT
CTTGGCATCAATTGCGATTCCTCAATACCAAAAATATGTGGCAAAGTCTGAAGTAGCATCAGCACTTGCCACACTCACCG
GCGTAAAAACGAACGTAGAAGCATATGCAGTTGAAAATGGAGCTTTCCCTGCAACAGGTAAAGAGGGTGAACTAGGTGTA
CCAAGCACAATTCCATCAGGAACGATAGCTTTTGCTACAACTGGATCCGCTGCTACTGGTACTATTACTTTCACGTTTAA
AGCTAGTGGTGTAAGTAACTTAATCACCGGTAAGAGTTTCGCTTTAGCAAGAGATGGTAGTGGCACATGGACTTGTGACG
GTACATCAAGTGATGCAGTTACAGATGATCTTCTACCCAAAAATTGTCGCCCGTAG
ATGAAAAAGCATAACCGACTAATAAAACAGCAGGGCTTTACCCTGATTGAATTAATGATAGTGGTGGCAATTATTGGTGT
CTTGGCATCAATTGCGATTCCTCAATACCAAAAATATGTGGCAAAGTCTGAAGTAGCATCAGCACTTGCCACACTCACCG
GCGTAAAAACGAACGTAGAAGCATATGCAGTTGAAAATGGAGCTTTCCCTGCAACAGGTAAAGAGGGTGAACTAGGTGTA
CCAAGCACAATTCCATCAGGAACGATAGCTTTTGCTACAACTGGATCCGCTGCTACTGGTACTATTACTTTCACGTTTAA
AGCTAGTGGTGTAAGTAACTTAATCACCGGTAAGAGTTTCGCTTTAGCAAGAGATGGTAGTGGCACATGGACTTGTGACG
GTACATCAAGTGATGCAGTTACAGATGATCTTCTACCCAAAAATTGTCGCCCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.66 |
97.351 |
0.483 |
| pilA | Vibrio cholerae strain A1552 |
49.66 |
97.351 |
0.483 |
| pilA | Vibrio cholerae C6706 |
49.66 |
97.351 |
0.483 |
| pilA | Pseudomonas aeruginosa PAK |
46.98 |
98.675 |
0.464 |
| pilA | Acinetobacter baumannii strain A118 |
44.755 |
94.702 |
0.424 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.328 |
86.755 |
0.411 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.69 |
96.026 |
0.391 |
| pilA2 | Legionella pneumophila str. Paris |
40.278 |
95.364 |
0.384 |
| pilE | Neisseria gonorrhoeae MS11 |
35.669 |
100 |
0.371 |
| pilA | Acinetobacter nosocomialis M2 |
37.584 |
98.675 |
0.371 |
| comP | Acinetobacter baylyi ADP1 |
37.086 |
100 |
0.371 |