Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EWA66_RS06665 Genome accession   NZ_CP035680
Coordinates   1395595..1396821 (-) Length   408 a.a.
NCBI ID   WP_039439516.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390595..1401821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS06625 rpsP 1390647..1390895 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  EWA66_RS06630 rimM 1390910..1391458 (+) 549 WP_039430456.1 ribosome maturation factor RimM -
  EWA66_RS06635 trmD 1391486..1392235 (+) 750 WP_039439511.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EWA66_RS06640 rplS 1392278..1392631 (+) 354 WP_039430454.1 50S ribosomal protein L19 -
  EWA66_RS06645 yacG 1392924..1393118 (-) 195 WP_039430453.1 DNA gyrase inhibitor YacG -
  EWA66_RS06650 zapD 1393203..1393943 (-) 741 WP_039430452.1 cell division protein ZapD -
  EWA66_RS06655 coaE 1393976..1394584 (-) 609 WP_039439514.1 dephospho-CoA kinase -
  EWA66_RS06660 pilD 1394586..1395455 (-) 870 WP_039439602.1 prepilin peptidase Machinery gene
  EWA66_RS06665 pilC 1395595..1396821 (-) 1227 WP_039439516.1 type II secretion system F family protein Machinery gene
  EWA66_RS06670 pilB 1396844..1398532 (-) 1689 WP_039439517.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EWA66_RS06675 pilA 1398533..1398988 (-) 456 WP_039439519.1 pilin Machinery gene
  EWA66_RS06680 nadC 1399204..1400091 (-) 888 WP_039439520.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EWA66_RS06685 ampD 1400184..1400747 (+) 564 WP_039439522.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45274.35 Da        Isoelectric Point: 10.3476

>NTDB_id=343559 EWA66_RS06665 WP_039439516.1 1395595..1396821(-) (pilC) [Vibrio navarrensis strain 08-2462]
MKVNAPVQIKNYRWKGINSSGKKVSGDVLAISEIEVRDKLHAQHIKIRKIKKSSVSILTRISHRVKSRDITLFTRQISTM
LSTGVPILQALKLVADNHRKAEMKSILTNVSKAIETGTPMSKALRTASHHFDGLYTDLVATGEQSGNLALVFERLALYRE
KSEELRSKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFVGFGAELPWFTQKVLDLSDFVQAYGSGFFIALISAIYL
MRSISRKSDQVKLKFSRLSLRLPVLGGVFSKAAIAKFSRTLATSFSSGIPILTSLQTTSKTSGNLHYQYAIESVYRDTAA
GMPMYIAMRNSNAFPELVLQMVMIGEESGRLDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=343559 EWA66_RS06665 WP_039439516.1 1395595..1396821(-) (pilC) [Vibrio navarrensis strain 08-2462]
ATGAAGGTAAACGCGCCTGTGCAGATTAAGAATTACCGTTGGAAGGGCATCAATAGCTCAGGCAAAAAAGTATCGGGTGA
TGTGTTAGCCATTAGTGAAATCGAAGTGCGTGACAAGCTGCATGCGCAGCACATCAAGATCCGCAAGATAAAAAAATCCA
GCGTCTCAATACTGACCCGCATCAGTCACCGAGTCAAAAGCCGCGACATCACTCTCTTTACCCGCCAAATCTCGACCATG
CTCTCCACGGGAGTTCCTATCCTACAAGCGCTAAAACTGGTCGCCGATAACCACCGCAAAGCGGAGATGAAGTCCATTTT
AACCAACGTGAGCAAAGCGATTGAAACGGGCACACCAATGTCCAAAGCGTTACGAACCGCCAGCCATCACTTTGATGGGC
TGTACACGGATTTGGTCGCGACAGGCGAGCAGTCAGGCAACCTTGCGCTGGTATTCGAACGCTTGGCACTCTATCGAGAA
AAAAGCGAAGAACTGCGTTCCAAAGTGATCAAAGCATTGATTTATCCTTGCATGGTGGTGCTCGTCGCCTTGGGCGTCTC
TTATCTGATGCTAACGCAAGTGATTCCTGAGTTTCGCAAAATGTTTGTCGGCTTTGGTGCCGAGCTGCCTTGGTTTACGC
AAAAGGTGCTCGATTTATCGGACTTTGTCCAAGCTTACGGTAGCGGTTTTTTTATCGCCCTTATCAGCGCCATTTACCTG
ATGCGCAGCATCAGTCGCAAGTCCGATCAGGTTAAACTGAAGTTTTCCCGCCTCAGCTTGAGGCTCCCGGTACTCGGTGG
CGTATTTTCCAAAGCGGCGATTGCCAAGTTCAGCCGCACATTAGCCACCAGTTTTAGCTCGGGTATCCCGATTCTAACCA
GCTTACAAACCACCAGCAAAACGTCAGGCAATCTGCACTATCAATACGCGATTGAAAGTGTTTATCGCGACACCGCCGCA
GGAATGCCGATGTACATTGCGATGCGCAACAGCAACGCCTTTCCCGAACTGGTGCTGCAAATGGTGATGATCGGCGAAGA
GTCGGGGCGTCTTGACGATATGCTCAATAAAATCGCGACCATCTATGAGTTTGAGGTGGACAACACCGTAGACAACCTCG
GTAAGATCCTTGAGCCGCTGATCATCGTTTTTCTCGGCGTGGTCGTCGGCGGTTTGGTCGCGGCCATGTACCTACCAATA
TTTAACTTAATGAGTGTTATGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

75.98

100

0.76
  pilC Vibrio cholerae strain A1552

74.51

100

0.745
  pilC Acinetobacter baumannii D1279779

39.951

100

0.4
  pilG Neisseria gonorrhoeae MS11

40.547

98.529

0.4
  pilG Neisseria meningitidis 44/76-A

40.299

98.529

0.397
  pilC Legionella pneumophila strain ERS1305867

39.753

99.265

0.395
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Pseudomonas stutzeri DSM 10701

39.401

98.284

0.387

Multiple sequence alignment