Detailed information NTG0343558

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EWA66_RS06660
• Genome accession: NZ_CP035680
• Coordinates: 1394586..1395455 (-)
• Length: 289 a.a.
• NCBI ID: WP_039439602.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 08-2462
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1389586..1400455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EWA66_RS06625	rpsP	1390647..1390895 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
EWA66_RS06630	rimM	1390910..1391458 (+)	549	WP_039430456.1	ribosome maturation factor RimM	-
EWA66_RS06635	trmD	1391486..1392235 (+)	750	WP_039439511.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EWA66_RS06640	rplS	1392278..1392631 (+)	354	WP_039430454.1	50S ribosomal protein L19	-
EWA66_RS06645	yacG	1392924..1393118 (-)	195	WP_039430453.1	DNA gyrase inhibitor YacG	-
EWA66_RS06650	zapD	1393203..1393943 (-)	741	WP_039430452.1	cell division protein ZapD	-
EWA66_RS06655	coaE	1393976..1394584 (-)	609	WP_039439514.1	dephospho-CoA kinase	-
EWA66_RS06660	pilD	1394586..1395455 (-)	870	WP_039439602.1	prepilin peptidase	Machinery gene
EWA66_RS06665	pilC	1395595..1396821 (-)	1227	WP_039439516.1	type II secretion system F family protein	Machinery gene
EWA66_RS06670	pilB	1396844..1398532 (-)	1689	WP_039439517.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EWA66_RS06675	pilA	1398533..1398988 (-)	456	WP_039439519.1	pilin	Machinery gene
EWA66_RS06680	nadC	1399204..1400091 (-)	888	WP_039439520.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32297.55 Da
• Isoelectric Point: 7.8837

>NTDB_id=343558 EWA66_RS06660 WP_039439602.1 1394586..1395455(-) (pilD) [Vibrio navarrensis strain 08-2462]
MDALHYYPWLYVGLAALFGLIVGSFLNVVIYRLPKMMELEWQRECAEAFPQYAIPAPKETLTLSTPRSTCPTCHTPIRIR
DNIPLLSWLLLKGRCHQCQSKISGRYPAVELLSATLCALVAWKFGYSLYSLALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWSGIALALLEISPVSLQNSVIGAMAGYLCLWSVYHLFRLMTGKEGMGYGDFKLLAALGAWLGWQSLLMIILLSSVVGL
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVALMWGESLMSWYFSVMMGA

Nucleotide

• Length: 870 bp

>NTDB_id=343558 EWA66_RS06660 WP_039439602.1 1394586..1395455(-) (pilD) [Vibrio navarrensis strain 08-2462]
ATGGATGCATTGCACTACTATCCTTGGCTGTATGTTGGCCTAGCGGCGTTATTTGGCTTGATTGTCGGTAGCTTTCTCAA
CGTGGTTATCTATCGCTTGCCGAAAATGATGGAGCTGGAGTGGCAACGGGAATGTGCCGAGGCCTTTCCTCAATACGCCA
TCCCTGCGCCGAAGGAAACTCTCACTCTTAGCACGCCGCGTTCCACTTGCCCAACGTGCCATACACCGATTCGTATCCGC
GATAACATTCCGCTACTGAGTTGGCTTTTGCTCAAAGGGCGCTGTCATCAGTGTCAAAGTAAGATCAGTGGCCGCTACCC
TGCGGTTGAGCTGCTCAGCGCAACCCTATGCGCCTTGGTAGCGTGGAAATTTGGCTACAGCCTTTACTCGCTGGCACTGC
TGTTTTTCACCTTTACCTTGATCGCTGCGACCTTTATCGATCTCGATACCATGCTTTTGCCAGATCAACTGACCCTGCCT
TTAACTTGGTCCGGTATTGCCCTTGCGCTACTGGAAATCAGCCCTGTCTCATTGCAAAACTCGGTGATTGGCGCCATGGC
AGGCTACCTCTGCCTTTGGTCTGTCTATCACCTTTTCCGTCTGATGACAGGCAAAGAAGGCATGGGGTATGGTGATTTTA
AGTTATTGGCAGCGCTCGGTGCTTGGCTAGGCTGGCAATCACTTCTGATGATCATTTTGCTCTCTTCGGTGGTTGGGCTA
ATCTTTGGCCTGATCCAACTTCGCTTACAAAAACAGGGCATCGAAAAAGCGTTTCCTTTTGGCCCCTATCTCGCCATCGC
CGGCTGGGTCGCATTGATGTGGGGCGAGTCGTTAATGAGTTGGTATTTCAGCGTAATGATGGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.087	100	0.751
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter nosocomialis M2	52.381	94.464	0.495
pilD	Acinetobacter baumannii D1279779	51.648	94.464	0.488
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446