Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EWA66_RS06605 Genome accession   NZ_CP035680
Coordinates   1386002..1386520 (+) Length   172 a.a.
NCBI ID   WP_039430460.1    Uniprot ID   A0A0F2HW57
Organism   Vibrio navarrensis strain 08-2462     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381002..1391520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS06595 gshA 1383754..1385319 (+) 1566 WP_039439506.1 glutamate--cysteine ligase -
  EWA66_RS06600 - 1385378..1385938 (+) 561 WP_171816740.1 hypothetical protein -
  EWA66_RS06605 luxS 1386002..1386520 (+) 519 WP_039430460.1 S-ribosylhomocysteine lyase Regulator
  EWA66_RS06610 - 1386617..1387894 (-) 1278 WP_039437916.1 HlyC/CorC family transporter -
  EWA66_RS06615 - 1388004..1388798 (-) 795 WP_039439509.1 inner membrane protein YpjD -
  EWA66_RS06620 ffh 1389011..1390390 (+) 1380 WP_039430457.1 signal recognition particle protein -
  EWA66_RS06625 rpsP 1390647..1390895 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  EWA66_RS06630 rimM 1390910..1391458 (+) 549 WP_039430456.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.71 Da        Isoelectric Point: 4.8362

>NTDB_id=343557 EWA66_RS06605 WP_039430460.1 1386002..1386520(+) (luxS) [Vibrio navarrensis strain 08-2462]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLYAGFMRKHLNGESVEIIDISP
MGCRTGFYMSLIGAPTEQSVAAAWQASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIASNILAAGISVNKNDDLA
LPAEMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343557 EWA66_RS06605 WP_039430460.1 1386002..1386520(+) (luxS) [Vibrio navarrensis strain 08-2462]
ATGCCGTTATTAGATAGTTTTACCGTCGATCACACGAGAATGCAGGCACCGGCCGTGCGTGTTGCCAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTGCGTTTTACTGTGCCAAACCAAGACATTTTGTCGGAAAAAGGGATCC
ACACCTTAGAGCATTTGTATGCAGGCTTTATGCGCAAGCACCTCAATGGAGAGAGTGTAGAGATCATCGACATTTCGCCA
ATGGGATGTCGCACCGGTTTTTACATGAGCTTGATTGGTGCGCCGACAGAGCAAAGCGTTGCTGCTGCGTGGCAAGCATC
GATGGAAGATGTACTGAAAGTGGAAAGCCAGAACAAGATCCCAGAGCTGAACGAGTACCAATGTGGTACGGCGGCGATGC
ACTCGCTGGAAGAGGCAAAACAGATCGCCAGCAACATTCTCGCCGCGGGTATCTCAGTCAATAAAAACGACGACTTAGCA
TTGCCAGCAGAGATGCTCAAAGAGTTGAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment