Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F1716_RS03980 Genome accession   NZ_CP045048
Coordinates   679825..680598 (+) Length   257 a.a.
NCBI ID   WP_070317309.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 674825..685598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS03965 (F1716_03990) - 675674..677608 (-) 1935 WP_070317282.1 ribonuclease R family protein -
  F1716_RS03970 (F1716_03995) ilvC 677727..678749 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  F1716_RS03975 (F1716_04000) - 678753..679835 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  F1716_RS03980 (F1716_04005) dprA 679825..680598 (+) 774 WP_070317309.1 DNA-processing protein DprA Machinery gene
  F1716_RS03985 (F1716_04010) dprB 680595..680978 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  F1716_RS03990 (F1716_04015) - 681007..681846 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F1716_RS03995 (F1716_04020) msrA 682022..682519 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F1716_RS04000 (F1716_04025) ppa 682561..683079 (-) 519 WP_002852138.1 inorganic diphosphatase -
  F1716_RS04005 (F1716_04030) adk 683089..683667 (-) 579 WP_032590860.1 adenylate kinase -
  F1716_RS04010 (F1716_04035) aspS 683664..685415 (-) 1752 WP_052777314.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28872.60 Da        Isoelectric Point: 6.7118

>NTDB_id=343557 F1716_RS03980 WP_070317309.1 679825..680598(+) (dprA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKHALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=343557 F1716_RS03980 WP_070317309.1 679825..680598(+) (dprA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACATGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment