Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ELQ88_RS06435 | Genome accession | NZ_CP034783 |
| Coordinates | 964925..965344 (+) | Length | 139 a.a. |
| NCBI ID | WP_138964224.1 | Uniprot ID | A0A5B7VUI0 |
| Organism | Pseudomonas sp. MPC6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 959925..970344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELQ88_RS06410 (ELQ88_06410) | yacG | 960094..960294 (-) | 201 | WP_123367803.1 | DNA gyrase inhibitor YacG | - |
| ELQ88_RS06415 (ELQ88_06415) | coaE | 960291..960914 (-) | 624 | WP_138964218.1 | dephospho-CoA kinase | - |
| ELQ88_RS06420 (ELQ88_06420) | pilD | 960911..961783 (-) | 873 | WP_138964220.1 | A24 family peptidase | Machinery gene |
| ELQ88_RS06425 (ELQ88_06425) | pilC | 961785..963002 (-) | 1218 | WP_128870806.1 | type II secretion system F family protein | Machinery gene |
| ELQ88_RS06430 (ELQ88_06430) | pilB | 963005..964699 (-) | 1695 | WP_138964222.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ELQ88_RS06435 (ELQ88_06435) | pilA | 964925..965344 (+) | 420 | WP_138964224.1 | pilin | Machinery gene |
| ELQ88_RS06440 (ELQ88_06440) | - | 965660..966013 (+) | 354 | WP_138964226.1 | BON domain-containing protein | - |
| ELQ88_RS06445 (ELQ88_06445) | - | 966323..966619 (-) | 297 | WP_128870675.1 | DUF2845 domain-containing protein | - |
| ELQ88_RS06450 (ELQ88_06450) | - | 966619..969570 (-) | 2952 | WP_138964228.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14033.21 Da Isoelectric Point: 7.5910
>NTDB_id=332993 ELQ88_RS06435 WP_138964224.1 964925..965344(+) (pilA) [Pseudomonas sp. MPC6]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQAKAKVTAGLAEISALKIPFEDLMNNGNGPADVTAIGGVTPTSNCAL
TASGTATSGAGTIVCTIVNAPAPVLNKTITLTRSNTGWVCTSTADQDFLPKGCTTAAGA
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQAKAKVTAGLAEISALKIPFEDLMNNGNGPADVTAIGGVTPTSNCAL
TASGTATSGAGTIVCTIVNAPAPVLNKTITLTRSNTGWVCTSTADQDFLPKGCTTAAGA
Nucleotide
Download Length: 420 bp
>NTDB_id=332993 ELQ88_RS06435 WP_138964224.1 964925..965344(+) (pilA) [Pseudomonas sp. MPC6]
ATGAATACTCAGAAAGGTTTTACGCTTATCGAATTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTACTCGAAGTATCAGGCGAAGGCCAAGGTCACCGCTGGCCTGGCGGAGATTTCGGCGCTGAAAATACCATTTG
AAGACCTGATGAATAACGGGAACGGTCCGGCAGATGTGACGGCAATTGGAGGAGTTACCCCAACCTCGAATTGCGCACTA
ACTGCTTCTGGAACAGCCACTAGTGGTGCTGGCACAATTGTTTGTACGATCGTTAACGCGCCTGCACCGGTTCTCAACAA
GACGATCACGCTGACGCGCTCGAACACTGGCTGGGTTTGCACCAGCACTGCGGACCAGGACTTCTTGCCTAAAGGTTGCA
CCACTGCCGCTGGCGCTTAA
ATGAATACTCAGAAAGGTTTTACGCTTATCGAATTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTACTCGAAGTATCAGGCGAAGGCCAAGGTCACCGCTGGCCTGGCGGAGATTTCGGCGCTGAAAATACCATTTG
AAGACCTGATGAATAACGGGAACGGTCCGGCAGATGTGACGGCAATTGGAGGAGTTACCCCAACCTCGAATTGCGCACTA
ACTGCTTCTGGAACAGCCACTAGTGGTGCTGGCACAATTGTTTGTACGATCGTTAACGCGCCTGCACCGGTTCTCAACAA
GACGATCACGCTGACGCGCTCGAACACTGGCTGGGTTTGCACCAGCACTGCGGACCAGGACTTCTTGCCTAAAGGTTGCA
CCACTGCCGCTGGCGCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
48.551 |
99.281 |
0.482 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.985 |
98.561 |
0.453 |
| pilA | Pseudomonas aeruginosa PAK |
40.132 |
100 |
0.439 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
97.122 |
0.417 |
| comP | Acinetobacter baylyi ADP1 |
40 |
100 |
0.417 |
| pilA2 | Legionella pneumophila str. Paris |
39.86 |
100 |
0.41 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.161 |
100 |
0.403 |
| pilA | Vibrio cholerae C6706 |
38.462 |
100 |
0.396 |
| pilA | Vibrio cholerae strain A1552 |
38.462 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.462 |
100 |
0.396 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.276 |
88.489 |
0.374 |