Detailed information NTG0332990

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ELQ88_RS06420
• Genome accession: NZ_CP034783
• Coordinates: 960911..961783 (-)
• Length: 290 a.a.
• NCBI ID: WP_138964220.1
• Uniprot ID: A0A5B7VUR4
• Organism: Pseudomonas sp. MPC6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 955911..966783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELQ88_RS06390 (ELQ88_06390)	-	956717..957985 (+)	1269	WP_128870797.1	OprD family porin	-
ELQ88_RS06395 (ELQ88_06395)	-	957994..958236 (-)	243	WP_128870798.1	DUF2790 domain-containing protein	-
ELQ88_RS06400 (ELQ88_06400)	-	958358..959290 (+)	933	WP_138964214.1	LysR family transcriptional regulator	-
ELQ88_RS06405 (ELQ88_06405)	-	959367..960056 (+)	690	WP_138964216.1	energy-coupling factor ABC transporter permease	-
ELQ88_RS06410 (ELQ88_06410)	yacG	960094..960294 (-)	201	WP_123367803.1	DNA gyrase inhibitor YacG	-
ELQ88_RS06415 (ELQ88_06415)	coaE	960291..960914 (-)	624	WP_138964218.1	dephospho-CoA kinase	-
ELQ88_RS06420 (ELQ88_06420)	pilD	960911..961783 (-)	873	WP_138964220.1	A24 family peptidase	Machinery gene
ELQ88_RS06425 (ELQ88_06425)	pilC	961785..963002 (-)	1218	WP_128870806.1	type II secretion system F family protein	Machinery gene
ELQ88_RS06430 (ELQ88_06430)	pilB	963005..964699 (-)	1695	WP_138964222.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ELQ88_RS06435 (ELQ88_06435)	pilA	964925..965344 (+)	420	WP_138964224.1	pilin	Machinery gene
ELQ88_RS06440 (ELQ88_06440)	-	965660..966013 (+)	354	WP_138964226.1	BON domain-containing protein	-
ELQ88_RS06445 (ELQ88_06445)	-	966323..966619 (-)	297	WP_128870675.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32049.33 Da
• Isoelectric Point: 7.9785

>NTDB_id=332990 ELQ88_RS06420 WP_138964220.1 960911..961783(-) (pilD) [Pseudomonas sp. MPC6]
MPLNEILTAYPLAFIVIAAVVGLLVGSFLNVVIWRLPKMLEREWRGQAHDILGLPEETPLPVYNLLLPSSQCPHCGHRIR
AWENIPVLSFALLRGRCSSCKTSISTRYPLTELACGLLSAFIAWHFGFGWPACMTLVLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSFGLFVPLQDALWGAIAGYMALWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSVVG
AVIGVILLRMRNAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=332990 ELQ88_RS06420 WP_138964220.1 960911..961783(-) (pilD) [Pseudomonas sp. MPC6]
ATGCCCTTGAACGAAATTCTCACGGCCTACCCGCTGGCCTTCATCGTCATTGCCGCAGTGGTCGGCCTGCTTGTCGGCAG
CTTTCTCAATGTAGTCATCTGGCGCCTGCCCAAAATGCTCGAGCGTGAGTGGCGAGGGCAGGCCCATGACATTCTGGGGT
TGCCCGAGGAAACGCCCCTGCCGGTTTACAACCTGCTACTGCCTTCCTCTCAGTGCCCGCACTGTGGCCACCGGATCCGA
GCCTGGGAAAACATTCCAGTGCTCAGCTTTGCGTTGCTGCGAGGGCGCTGCTCAAGCTGCAAGACGTCGATCAGCACACG
CTACCCGTTGACCGAACTGGCCTGCGGCCTGCTGTCGGCGTTCATCGCCTGGCACTTCGGGTTCGGTTGGCCTGCGTGCA
TGACACTGGTCCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACGCCGAGCACCAGCTATTACCGGATGTGCTGGTG
CTACCACTGATGTGGCTCGGATTGATCGTCAACAGTTTCGGCCTGTTCGTGCCGTTGCAGGACGCGCTGTGGGGCGCAAT
AGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGCCACGGAGATT
TCAAGTTGTTGGCAATGCTCGGGGCCTGGGGAGGCTGGCAGATCCTGCCTCTGACCATCCTGTTGTCGTCCGTGGTGGGC
GCCGTTATCGGCGTGATCTTGCTGCGCATGCGCAACGCGAAAACCTCGACGCCGATCCCTTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: A0A5B7VUR4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.113	97.931	0.51
pilD	Acinetobacter baumannii D1279779	49.084	94.138	0.462
pilD	Acinetobacter nosocomialis M2	48.352	94.138	0.455
pilD	Neisseria gonorrhoeae MS11	51.562	88.276	0.455