Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ELQ88_RS06425 Genome accession   NZ_CP034783
Coordinates   961785..963002 (-) Length   405 a.a.
NCBI ID   WP_128870806.1    Uniprot ID   A0A1V4LT89
Organism   Pseudomonas sp. MPC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 956785..968002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS06395 (ELQ88_06395) - 957994..958236 (-) 243 WP_128870798.1 DUF2790 domain-containing protein -
  ELQ88_RS06400 (ELQ88_06400) - 958358..959290 (+) 933 WP_138964214.1 LysR family transcriptional regulator -
  ELQ88_RS06405 (ELQ88_06405) - 959367..960056 (+) 690 WP_138964216.1 energy-coupling factor ABC transporter permease -
  ELQ88_RS06410 (ELQ88_06410) yacG 960094..960294 (-) 201 WP_123367803.1 DNA gyrase inhibitor YacG -
  ELQ88_RS06415 (ELQ88_06415) coaE 960291..960914 (-) 624 WP_138964218.1 dephospho-CoA kinase -
  ELQ88_RS06420 (ELQ88_06420) pilD 960911..961783 (-) 873 WP_138964220.1 A24 family peptidase Machinery gene
  ELQ88_RS06425 (ELQ88_06425) pilC 961785..963002 (-) 1218 WP_128870806.1 type II secretion system F family protein Machinery gene
  ELQ88_RS06430 (ELQ88_06430) pilB 963005..964699 (-) 1695 WP_138964222.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ELQ88_RS06435 (ELQ88_06435) pilA 964925..965344 (+) 420 WP_138964224.1 pilin Machinery gene
  ELQ88_RS06440 (ELQ88_06440) - 965660..966013 (+) 354 WP_138964226.1 BON domain-containing protein -
  ELQ88_RS06445 (ELQ88_06445) - 966323..966619 (-) 297 WP_128870675.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44287.07 Da        Isoelectric Point: 9.7456

>NTDB_id=332991 ELQ88_RS06425 WP_128870806.1 961785..963002(-) (pilC) [Pseudomonas sp. MPC6]
MAVKAAKISVYAWEGTDRKGSKMTGELSGQNPALIKAQLRKQGINPGKVRKKSASIFNLGQRIKAQEIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIVVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSEFMQDWWWMMLGVLIAAVFGLR
HAFKTSQAFRDRTDTWLLKLPLVGTLMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRTSGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGAAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=332991 ELQ88_RS06425 WP_128870806.1 961785..963002(-) (pilC) [Pseudomonas sp. MPC6]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTGTATGCCTGGGAAGGCACGGACCGGAAAGGCTCGAAAATGACCGGCGAACT
CAGCGGTCAGAACCCGGCGCTGATCAAGGCGCAGTTGCGCAAACAAGGGATCAATCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGATCTTCAATCTTGGCCAGCGCATCAAGGCCCAGGAGATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTGCCGCTGCTGCAATCATTCGACATCATCGGCGAAGGCTTCGATAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCGGGGAACAGCTTCGCCGCGGCGTTGCGCAAAAAGCCGCAGTATTTCGATGAGCTCTACT
GCAATCTGGTCGATGCCGGCGAACAGGCCGGCGCCCTGGACACCCTGTTGGAACGGGTCGCGACCTACAAGGAGAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCGCTCGCCGTGGTGTTCGTCGCGATCGTCGTGACCGGGAT
TCTGCTGGTCAAGGTGGTCCCGCAGTTCGAGTCGGTGTTCAAGGGATTTGGCGCCGAACTGCCGGCCTTCACCGTCATGG
TCATCGGCCTGTCGGAATTCATGCAGGACTGGTGGTGGATGATGCTCGGCGTACTGATCGCAGCGGTCTTCGGCCTGCGA
CACGCGTTCAAGACCTCGCAAGCCTTTCGCGACCGGACGGATACCTGGCTGCTGAAACTGCCGTTGGTTGGCACGTTGAT
GTACAAGTCCGCCGTGGCCCGTTATGCCCGTACGCTGTCGACCACCTTCGCCGCCGGCGTGCCGTTGGTCGAGGCACTGG
AGTCAGTGGCGGGGGCGACCGGCAACGTCGTGTTCAAGCGTGCGGTGCTGCGCATCAGACAGGACGTGTCGACCGGCATG
CAGCTGAATTTTTCCATGCGCACCTCCGGCATCTTTCCGAACATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCCGG
GGCACTGGACGACATGCTCGACAAGGTCGCGAGCTTCTACGAGGACGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTACTGGGGGTCGTCGTCGGTGGCCTGGTGGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCGCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V4LT89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.593

100

0.726
  pilC Acinetobacter baylyi ADP1

60.294

100

0.607
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.878

96.79

0.425
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

41.045

99.259

0.407
  pilC Thermus thermophilus HB27

37.406

99.012

0.37

Multiple sequence alignment