Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   PXO_RS06900 Genome accession   NC_010717
Coordinates   1489916..1490341 (+) Length   141 a.a.
NCBI ID   WP_011408068.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae PXO99A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1486684..1503130 1489916..1490341 within 0


Gene organization within MGE regions


Location: 1486684..1503130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXO_RS06885 (PXO_04889) coaE 1486810..1487418 (-) 609 WP_011258357.1 dephospho-CoA kinase -
  PXO_RS06890 (PXO_04888) - 1487432..1488295 (-) 864 WP_011258358.1 A24 family peptidase -
  PXO_RS06895 (PXO_04887) pilC 1488302..1489561 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  PXO_RS06900 (PXO_04886) pilA2 1489916..1490341 (+) 426 WP_011408068.1 pilin Machinery gene
  PXO_RS06905 (PXO_04885) - 1490476..1492065 (+) 1590 WP_011408069.1 phosphoethanolamine transferase -
  PXO_RS06910 - 1492076..1492705 (+) 630 WP_011408070.1 hypothetical protein -
  PXO_RS06915 (PXO_04883) - 1492675..1494201 (+) 1527 WP_041182621.1 membrane protein -
  PXO_RS06920 (PXO_04882) pilB 1494236..1495969 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PXO_RS06925 (PXO_05527) - 1495978..1496202 (-) 225 WP_339325312.1 cell filamentation protein Fic -
  PXO_RS29435 (PXO_05528) - 1496326..1496487 (-) 162 WP_153296778.1 hypothetical protein -
  PXO_RS06930 - 1496549..1496755 (-) 207 WP_027703281.1 YhfG family protein -
  PXO_RS06935 (PXO_04881) pilR 1496828..1498279 (-) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  PXO_RS06940 (PXO_04880) - 1498550..1500163 (-) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  PXO_RS06945 (PXO_04879) sucC 1500397..1501566 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  PXO_RS06950 (PXO_04878) sucD 1501591..1502466 (+) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  PXO_RS06955 - 1502639..1503130 (+) 492 WP_027703282.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14442.76 Da        Isoelectric Point: 9.0090

>NTDB_id=30928 PXO_RS06900 WP_011408068.1 1489916..1490341(+) (pilA2) [Xanthomonas oryzae pv. oryzae PXO99A]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=30928 PXO_RS06900 WP_011408068.1 1489916..1490341(+) (pilA2) [Xanthomonas oryzae pv. oryzae PXO99A]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.471

96.454

0.496
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

41.818

100

0.489
  comP Acinetobacter baylyi ADP1

43.537

100

0.454
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.054

100

0.447
  pilE Neisseria gonorrhoeae strain FA1090

37.278

100

0.447
  pilE Neisseria gonorrhoeae MS11

37.5

100

0.426
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.446

98.582

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.222

95.745

0.404
  pilA/pilA1 Eikenella corrodens VA1

37.333

100

0.397
  pilA Acinetobacter baumannii strain A118

38.298

100

0.383
  pilA Pseudomonas aeruginosa PAK

36

100

0.383
  pilA Vibrio parahaemolyticus RIMD 2210633

40.157

90.071

0.362

Multiple sequence alignment