Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PXO_RS06935 Genome accession   NC_010717
Coordinates   1496828..1498279 (-) Length   483 a.a.
NCBI ID   WP_011258365.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae PXO99A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1486684..1503130 1496828..1498279 within 0


Gene organization within MGE regions


Location: 1486684..1503130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXO_RS06885 (PXO_04889) coaE 1486810..1487418 (-) 609 WP_011258357.1 dephospho-CoA kinase -
  PXO_RS06890 (PXO_04888) - 1487432..1488295 (-) 864 WP_011258358.1 A24 family peptidase -
  PXO_RS06895 (PXO_04887) pilC 1488302..1489561 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  PXO_RS06900 (PXO_04886) pilA2 1489916..1490341 (+) 426 WP_011408068.1 pilin Machinery gene
  PXO_RS06905 (PXO_04885) - 1490476..1492065 (+) 1590 WP_011408069.1 phosphoethanolamine transferase -
  PXO_RS06910 - 1492076..1492705 (+) 630 WP_011408070.1 hypothetical protein -
  PXO_RS06915 (PXO_04883) - 1492675..1494201 (+) 1527 WP_041182621.1 membrane protein -
  PXO_RS06920 (PXO_04882) pilB 1494236..1495969 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PXO_RS06925 (PXO_05527) - 1495978..1496202 (-) 225 WP_339325312.1 cell filamentation protein Fic -
  PXO_RS29435 (PXO_05528) - 1496326..1496487 (-) 162 WP_153296778.1 hypothetical protein -
  PXO_RS06930 - 1496549..1496755 (-) 207 WP_027703281.1 YhfG family protein -
  PXO_RS06935 (PXO_04881) pilR 1496828..1498279 (-) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  PXO_RS06940 (PXO_04880) - 1498550..1500163 (-) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  PXO_RS06945 (PXO_04879) sucC 1500397..1501566 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  PXO_RS06950 (PXO_04878) sucD 1501591..1502466 (+) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  PXO_RS06955 - 1502639..1503130 (+) 492 WP_027703282.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52462.22 Da        Isoelectric Point: 6.8290

>NTDB_id=30930 PXO_RS06935 WP_011258365.1 1496828..1498279(-) (pilR) [Xanthomonas oryzae pv. oryzae PXO99A]
MRRAPLDNCRLSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=30930 PXO_RS06935 WP_011258365.1 1496828..1498279(-) (pilR) [Xanthomonas oryzae pv. oryzae PXO99A]
TTGCGCCGCGCCCCACTCGACAATTGTCGACTATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment