Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DYQ48_RS05860 Genome accession   NZ_CP031607
Coordinates   1340677..1341120 (+) Length   147 a.a.
NCBI ID   WP_154844509.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain VT106     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335677..1346120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ48_RS05825 (DYQ48_05835) - 1335801..1335986 (-) 186 WP_006448358.1 hypothetical protein -
  DYQ48_RS05830 (DYQ48_05840) - 1336084..1336485 (-) 402 WP_074058084.1 SymE family type I addiction module toxin -
  DYQ48_RS05840 (DYQ48_05850) coaE 1337019..1337642 (-) 624 WP_154844506.1 dephospho-CoA kinase -
  DYQ48_RS05845 (DYQ48_05855) - 1337656..1338519 (-) 864 WP_002812278.1 A24 family peptidase -
  DYQ48_RS05850 (DYQ48_05860) pilC 1338526..1339782 (-) 1257 WP_154844507.1 type II secretion system F family protein Machinery gene
  DYQ48_RS05855 (DYQ48_05865) - 1340130..1340570 (+) 441 WP_154844508.1 pilin -
  DYQ48_RS05860 (DYQ48_05870) pilA 1340677..1341120 (+) 444 WP_154844509.1 pilin Machinery gene
  DYQ48_RS05865 (DYQ48_05875) pilB 1341151..1342896 (+) 1746 WP_154844510.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DYQ48_RS05870 (DYQ48_05880) pilR 1343240..1344694 (-) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 14792.97 Da        Isoelectric Point: 9.6567

>NTDB_id=307881 DYQ48_RS05860 WP_154844509.1 1340677..1341120(+) (pilA) [Xanthomonas hortorum strain VT106]
MRKINGFTLIELMIVVAIIAVLAAIAMPAYQDYVVRTRVSEALVLASGLKATVIVNASENSADLSRGASLVSSSDASANV
ASTSINSVNGAITVVTTAKAGNGLITLTPRGASGSALSAGTSPSGNVVWTCSSTIKQKYLPSTCSGT

Nucleotide


Download         Length: 444 bp        

>NTDB_id=307881 DYQ48_RS05860 WP_154844509.1 1340677..1341120(+) (pilA) [Xanthomonas hortorum strain VT106]
ATGAGGAAGATAAATGGATTCACCCTTATCGAGTTGATGATTGTTGTTGCAATAATTGCAGTGCTTGCCGCAATTGCTAT
GCCGGCTTATCAAGACTATGTTGTGCGTACGCGGGTATCTGAAGCTTTAGTGTTGGCAAGCGGATTGAAAGCTACTGTGA
TTGTCAATGCTTCGGAAAATTCAGCGGATTTGTCTCGAGGCGCCTCTCTTGTCTCAAGTTCTGATGCTTCCGCAAATGTT
GCATCTACTTCAATTAATTCAGTGAATGGCGCTATTACGGTGGTGACTACGGCAAAAGCCGGGAATGGATTAATTACTTT
GACGCCTCGCGGAGCTAGTGGTTCGGCTTTATCTGCAGGGACATCGCCCTCAGGTAATGTCGTGTGGACTTGCTCGTCGA
CAATTAAACAGAAGTATTTGCCATCGACGTGCTCGGGTACTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-144)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

44.242

100

0.497
  pilA2 Legionella pneumophila str. Paris

48.63

99.32

0.483
  pilA2 Legionella pneumophila strain ERS1305867

47.945

99.32

0.476
  comP Acinetobacter baylyi ADP1

43.671

100

0.469
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.079

100

0.456
  pilE Neisseria gonorrhoeae MS11

36.81

100

0.408
  pilE Neisseria gonorrhoeae strain FA1090

36.585

100

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.095

100

0.381
  comF Acinetobacter baylyi ADP1

39.716

95.918

0.381
  pilA Pseudomonas aeruginosa PAK

34.146

100

0.381
  pilA/pilA1 Eikenella corrodens VA1

33.939

100

0.381
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.913

100

0.374
  pilE Acinetobacter baumannii D1279779

40.441

92.517

0.374

Multiple sequence alignment