Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB849_RS02905 Genome accession   NZ_CP036487
Coordinates   572658..573437 (-) Length   259 a.a.
NCBI ID   WP_037996159.1    Uniprot ID   A0ABS0QLL7
Organism   Thermoactinomyces vulgaris strain CDF     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 567658..578437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS02885 (AB849_002885) coxB 567784..568737 (-) 954 WP_049719596.1 cytochrome c oxidase subunit II -
  AB849_RS02890 (AB849_002890) cyoE 568905..569855 (-) 951 WP_231564613.1 heme o synthase -
  AB849_RS02895 (AB849_002895) - 570286..570696 (-) 411 WP_037996158.1 ATP-binding protein -
  AB849_RS02900 (AB849_002900) - 570709..572490 (-) 1782 WP_049719595.1 ABC transporter ATP-binding protein -
  AB849_RS02905 (AB849_002905) codY 572658..573437 (-) 780 WP_037996159.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB849_RS02910 (AB849_002910) lepB 573658..574182 (-) 525 WP_049719594.1 signal peptidase I -
  AB849_RS02915 (AB849_002915) - 574315..574653 (-) 339 WP_037996164.1 hypothetical protein -
  AB849_RS02920 (AB849_002920) proC 574684..575514 (-) 831 WP_037996166.1 pyrroline-5-carboxylate reductase -
  AB849_RS02925 (AB849_002925) - 576202..576645 (-) 444 WP_082240699.1 GNAT family N-acetyltransferase -
  AB849_RS02930 (AB849_002930) - 576710..577399 (-) 690 WP_037996169.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28779.13 Da        Isoelectric Point: 4.9705

>NTDB_id=307880 AB849_RS02905 WP_037996159.1 572658..573437(-) (codY) [Thermoactinomyces vulgaris strain CDF]
MDLLNKTRRISKILQRNAGHNLVDFDEVAEALCDIIGANIYVVGPEGKLLGMAINHDVENERMNQYLKTREFPPEYAKLL
MEVDKSMTNVDVDSPYTAYPTEMKEMFKNGYTTIVPIMGGGDHLGTLVLSRLNNKFEEDDLILAEYGATVVGMEILRERA
GQVEEEARSRAVVQLAINSLSFSELEAAEHIFNELDGMEGLLVASKIADRVGITRSVIVNALRKLESAGVVESRSLGMKG
TYIKILNPKLLPALEKARH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=307880 AB849_RS02905 WP_037996159.1 572658..573437(-) (codY) [Thermoactinomyces vulgaris strain CDF]
ATGGATCTATTGAACAAAACACGACGCATTTCCAAAATTTTGCAAAGAAACGCAGGTCACAACCTGGTGGATTTTGATGA
GGTTGCAGAAGCGCTTTGTGACATTATCGGCGCCAACATCTATGTCGTCGGGCCTGAAGGAAAACTGTTGGGAATGGCGA
TCAACCATGACGTCGAGAATGAACGGATGAATCAGTATTTGAAAACCCGTGAATTCCCGCCGGAATATGCAAAATTGCTC
ATGGAAGTTGACAAATCCATGACAAACGTGGATGTGGACAGCCCGTACACGGCTTATCCGACTGAAATGAAAGAGATGTT
CAAAAACGGGTACACCACGATTGTTCCGATCATGGGTGGCGGTGACCACTTGGGAACATTGGTATTGTCCCGTCTGAACA
ATAAATTTGAAGAAGACGATTTGATCTTGGCAGAGTATGGGGCAACCGTCGTGGGAATGGAAATTTTGCGTGAGCGTGCC
GGCCAAGTTGAAGAGGAAGCACGGAGCCGTGCGGTTGTACAGCTGGCCATCAACTCCCTGTCCTTCAGCGAGTTGGAAGC
GGCTGAACACATTTTCAACGAATTGGATGGCATGGAAGGGCTCTTGGTCGCAAGCAAAATTGCCGACCGTGTGGGAATTA
CACGTTCCGTCATCGTAAATGCTCTGCGCAAACTGGAAAGTGCCGGGGTTGTGGAATCCCGTTCATTGGGAATGAAAGGA
ACCTACATCAAAATCCTGAATCCGAAATTGTTGCCGGCTTTGGAAAAAGCCCGTCACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-179)

CodY helix-turn-helix domain (HTH_CodY)

(199-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

66.279

99.614

0.66
  codY Lactococcus lactis subsp. lactis strain DGCC12653

44.094

98.069

0.432

Multiple sequence alignment