Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DYQ48_RS05850 Genome accession   NZ_CP031607
Coordinates   1338526..1339782 (-) Length   418 a.a.
NCBI ID   WP_154844507.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain VT106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333526..1344782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ48_RS05815 (DYQ48_05825) - 1334032..1335366 (+) 1335 WP_074058086.1 HAMP domain-containing sensor histidine kinase -
  DYQ48_RS05820 (DYQ48_05830) - 1335502..1335804 (-) 303 WP_074058085.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DYQ48_RS05825 (DYQ48_05835) - 1335801..1335986 (-) 186 WP_006448358.1 hypothetical protein -
  DYQ48_RS05830 (DYQ48_05840) - 1336084..1336485 (-) 402 WP_074058084.1 SymE family type I addiction module toxin -
  DYQ48_RS05840 (DYQ48_05850) coaE 1337019..1337642 (-) 624 WP_154844506.1 dephospho-CoA kinase -
  DYQ48_RS05845 (DYQ48_05855) - 1337656..1338519 (-) 864 WP_002812278.1 A24 family peptidase -
  DYQ48_RS05850 (DYQ48_05860) pilC 1338526..1339782 (-) 1257 WP_154844507.1 type II secretion system F family protein Machinery gene
  DYQ48_RS05855 (DYQ48_05865) - 1340130..1340570 (+) 441 WP_154844508.1 pilin -
  DYQ48_RS05860 (DYQ48_05870) pilA 1340677..1341120 (+) 444 WP_154844509.1 pilin Machinery gene
  DYQ48_RS05865 (DYQ48_05875) pilB 1341151..1342896 (+) 1746 WP_154844510.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DYQ48_RS05870 (DYQ48_05880) pilR 1343240..1344694 (-) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45787.19 Da        Isoelectric Point: 10.2556

>NTDB_id=307880 DYQ48_RS05850 WP_154844507.1 1338526..1339782(-) (pilC) [Xanthomonas hortorum strain VT106]
MSVARNVIKKPVDRSTSQLQPFIWEGTDKRGVKMKGEQAARNINMLRAELRRQGITPNVVKPKPKPLFGAAGKKVTPKDI
SFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQIRTDIEGGSSLHESISRHPVQFDELYRNLVRAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVVVVALVVSAILLVFVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWAL
LVIVAGAVIGFIYAYKRSPRMQHGMDRIILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=307880 DYQ48_RS05850 WP_154844507.1 1338526..1339782(-) (pilC) [Xanthomonas hortorum strain VT106]
ATGTCCGTCGCTCGCAACGTCATCAAAAAACCAGTCGATCGAAGCACAAGCCAGCTGCAGCCGTTTATCTGGGAAGGAAC
GGACAAGCGCGGCGTCAAGATGAAGGGAGAGCAAGCGGCGCGCAACATAAACATGTTGCGTGCCGAACTTCGTCGCCAAG
GCATCACACCAAACGTCGTTAAGCCCAAGCCAAAGCCACTGTTTGGCGCGGCAGGCAAAAAAGTGACTCCTAAGGACATC
TCGTTCTTTAGCCGCCAAATGGCAACCATGATGAAATCCGGCGTACCTATTGTTGGTTCACTGGAAATTATTGGGGAGGG
TCACAAAAACCCACGAATGAAGCAAATGGTTGGTCAGATAAGAACCGATATCGAGGGAGGCTCGTCCCTACATGAATCCA
TTAGCAGACATCCAGTCCAATTTGACGAGCTCTACCGAAACCTAGTCCGCGCAGGTGAAGGGGCAGGCGTGCTAGAAACC
GTGCTCGACACAGTTGCGACTTATAAAGAAAATATTGAGGCATTGAAGGGCAAGATCAAGAAAGCCCTTTTCTACCCTGC
AATGGTCGTCGTAGTTGCTCTCGTGGTTAGCGCAATTCTGCTAGTTTTCGTAGTCCCACAGTTCGAAGAGGTTTTCAAGG
GCTTTGGTGCGGAATTACCTGCTTTCACACAAATGATCGTAGCCGCGTCGCGCTTTATGGTTAGCTACTGGTGGGCTCTA
TTGGTCATTGTAGCGGGGGCAGTCATCGGCTTCATTTATGCCTACAAGCGCTCGCCACGCATGCAGCACGGCATGGATCG
GATTATCTTGAAGGTACCGGTCATAGGCCAAATCATGCACAACAGCGCGATCGCGCGCTTCGCCCGCACAACTGCCGTTA
CATTTAAAGCCGGTGTTCCGTTAGTGGAGGCGCTAGGGATTGTGGCTGGCGCCACAGGTAATAAAGTCTACGAAGAAGCC
GTGCTTCGCATGCGAGACGATGTGTCGGTGGGTTACCCGGTCAACATGGCCATGAAACAGGTCAATTTATTCCCGCACAT
GGTGATCCAAATGACTGCCATTGGCGAGGAAGCAGGTGCGCTTGACACTATGCTTTTCAAAGTTGCCGAGTACTTCGAGC
AGGAAGTCAACAACGCCGTAGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTCTTCATTGGCACCATCGTAGGC
GGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

97.129

0.517
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.737

0.498
  pilC Acinetobacter baylyi ADP1

51.365

96.411

0.495
  pilC Acinetobacter baumannii D1279779

50.62

96.411

0.488
  pilG Neisseria gonorrhoeae MS11

43.86

95.455

0.419
  pilG Neisseria meningitidis 44/76-A

43.358

95.455

0.414
  pilC Vibrio cholerae strain A1552

41.5

95.694

0.397
  pilC Vibrio campbellii strain DS40M4

40.695

96.411

0.392

Multiple sequence alignment