Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DYQ48_RS05870 Genome accession   NZ_CP031607
Coordinates   1343240..1344694 (-) Length   484 a.a.
NCBI ID   WP_174555994.1    Uniprot ID   -
Organism   Xanthomonas hortorum strain VT106     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1338240..1349694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ48_RS05850 (DYQ48_05860) pilC 1338526..1339782 (-) 1257 WP_154844507.1 type II secretion system F family protein Machinery gene
  DYQ48_RS05855 (DYQ48_05865) - 1340130..1340570 (+) 441 WP_154844508.1 pilin -
  DYQ48_RS05860 (DYQ48_05870) pilA 1340677..1341120 (+) 444 WP_154844509.1 pilin Machinery gene
  DYQ48_RS05865 (DYQ48_05875) pilB 1341151..1342896 (+) 1746 WP_154844510.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DYQ48_RS05870 (DYQ48_05880) pilR 1343240..1344694 (-) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator
  DYQ48_RS05875 (DYQ48_05885) - 1344780..1346393 (-) 1614 WP_006448368.1 HAMP domain-containing sensor histidine kinase -
  DYQ48_RS05880 (DYQ48_05890) sucC 1346626..1347795 (+) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  DYQ48_RS05885 (DYQ48_05895) sucD 1347820..1348695 (+) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52490.13 Da        Isoelectric Point: 6.5126

>NTDB_id=307883 DYQ48_RS05870 WP_174555994.1 1343240..1344694(-) (pilR) [Xanthomonas hortorum strain VT106]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=307883 DYQ48_RS05870 WP_174555994.1 1343240..1344694(-) (pilR) [Xanthomonas hortorum strain VT106]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACTG
CTGCCAATCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCCTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCGCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTATAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TTCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTTCAAGCCGCGCATGGCGGCACGCTGTTCCTAGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAGTTGCTACGGGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCTCCACCGAATCGCTGGTGG
ACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGTGACCTGGTCTCCGACGGCCGTTTCCGCCACGACCTGTATTAC
CGCATCAACGTGATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCACTCGACGCGCTGGACACATACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCTTGGCCGAAGACGACCAGATCAGCGCCAGC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCGTATATCGAGCAACTGGAACGCGCCGCGATCCAGAAAGCACTGG
AAGAGAATCGTTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACCTTTCGTGCGCTGCGCTACAAGCTCAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-135)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment