Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   DT536_RS06565 Genome accession   NZ_CP031011
Coordinates   1369964..1370392 (+) Length   142 a.a.
NCBI ID   WP_058870407.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364964..1375392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06545 (DT536_06545) - 1366486..1367364 (+) 879 WP_058870411.1 metal-dependent hydrolase -
  DT536_RS06550 (DT536_06550) - 1367514..1368104 (+) 591 WP_058870410.1 LemA family protein -
  DT536_RS06555 (DT536_06555) - 1368142..1369215 (+) 1074 WP_058870409.1 TPM domain-containing protein -
  DT536_RS06560 (DT536_06560) - 1369209..1369769 (+) 561 WP_058870408.1 TPM domain-containing protein -
  DT536_RS06565 (DT536_06565) pilA/pilAI 1369964..1370392 (+) 429 WP_058870407.1 pilin Machinery gene
  DT536_RS06570 (DT536_06570) - 1370448..1372118 (+) 1671 WP_058870406.1 PglL family O-oligosaccharyltransferase -
  DT536_RS06575 (DT536_06575) bfr 1372161..1372625 (-) 465 WP_058870405.1 bacterioferritin -
  DT536_RS06580 (DT536_06580) - 1372878..1373072 (-) 195 WP_010327639.1 bacterioferritin-associated ferredoxin -
  DT536_RS06585 (DT536_06585) - 1373227..1373610 (-) 384 WP_004691470.1 RidA family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14736.76 Da        Isoelectric Point: 8.1020

>NTDB_id=302840 DT536_RS06565 WP_058870407.1 1369964..1370392(+) (pilA/pilAI) [Acinetobacter johnsonii strain LXL_C1]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIAKSQATSALAEISPAKTQFEMAVNEGKTPSLTSTDAGFIGVSSSSQ
YCNIALTGSSPNFTGLQCTLKNGNASKINSKTITLTRDSATGTWTCATGNGLESKYKPGNCS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=302840 DT536_RS06565 WP_058870407.1 1369964..1370392(+) (pilA/pilAI) [Acinetobacter johnsonii strain LXL_C1]
ATGAACGCTCAAAAGGGTTTCACTCTTATTGAATTAATGATCGTTGTTGCAATTATCGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAGGATTACATTGCTAAGTCACAAGCAACATCTGCTTTAGCAGAAATTTCGCCAGCGAAAACACAATTTG
AAATGGCTGTAAATGAAGGTAAAACACCATCTTTGACTTCGACTGATGCTGGATTTATTGGTGTATCAAGCAGTTCACAA
TATTGTAATATTGCATTGACAGGTTCGAGTCCTAATTTCACAGGCTTACAATGTACTTTAAAAAATGGTAATGCATCAAA
AATTAACTCAAAAACAATTACATTAACTCGTGATTCTGCGACAGGCACTTGGACATGTGCTACAGGTAATGGTTTAGAAT
CTAAATATAAACCAGGTAATTGTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

61.871

97.887

0.606
  pilA Acinetobacter baumannii strain A118

52.703

100

0.549
  pilA/pilAII Pseudomonas stutzeri DSM 10701

55.072

97.183

0.535
  comP Acinetobacter baylyi ADP1

43.333

100

0.458
  pilA Pseudomonas aeruginosa PAK

43.046

100

0.458
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.426

100

0.444
  pilA Vibrio cholerae strain A1552

43.357

100

0.437
  pilA Vibrio cholerae C6706

43.357

100

0.437
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

43.357

100

0.437
  pilA/pilA1 Eikenella corrodens VA1

40.94

100

0.43
  pilA2 Legionella pneumophila strain ERS1305867

42.446

97.887

0.415
  pilA Acinetobacter nosocomialis M2

45.736

90.845

0.415
  pilA2 Legionella pneumophila str. Paris

41.727

97.887

0.408
  pilA Vibrio parahaemolyticus RIMD 2210633

43.548

87.324

0.38

Multiple sequence alignment