Detailed information NTG0299467

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: DP112_RS00805
• Genome accession: NZ_CP030125
• Coordinates: 126477..126758 (+)
• Length: 93 a.a.
• NCBI ID: WP_114866111.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA1003
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 121477..131758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP112_RS00785 (DP112_00785)	-	123138..123512 (+)	375	WP_024385120.1	DUF1033 family protein	-
DP112_RS00790 (DP112_00790)	-	123540..124490 (-)	951	WP_105134139.1	S66 peptidase family protein	-
DP112_RS00795 (DP112_00795)	comYA	124576..125526 (+)	951	WP_105149231.1	competence type IV pilus ATPase ComGA	Machinery gene
DP112_RS00800 (DP112_00800)	comYB	125438..126475 (+)	1038	WP_238139242.1	competence type IV pilus assembly protein ComGB	Machinery gene
DP112_RS00805 (DP112_00805)	comYC	126477..126758 (+)	282	WP_114866111.1	competence type IV pilus major pilin ComGC	Machinery gene
DP112_RS00810 (DP112_00810)	comGD	126739..127146 (+)	408	WP_114866112.1	competence type IV pilus minor pilin ComGD	-
DP112_RS00815 (DP112_00815)	comYE	127118..127411 (+)	294	WP_114866113.1	competence type IV pilus minor pilin ComGE	Machinery gene
DP112_RS00820 (DP112_00820)	comGF/cglF	127398..127832 (+)	435	WP_024407345.1	competence type IV pilus minor pilin ComGF	Machinery gene
DP112_RS00825 (DP112_00825)	comGG	127810..128220 (+)	411	WP_114866114.1	competence type IV pilus minor pilin ComGG	-
DP112_RS00830 (DP112_00830)	comYH	128277..129230 (+)	954	WP_114866115.1	class I SAM-dependent methyltransferase	Machinery gene
DP112_RS00835 (DP112_00835)	-	129280..130467 (+)	1188	WP_114866116.1	acetate kinase	-
DP112_RS00845 (DP112_00845)	-	130783..131334 (+)	552	WP_074391332.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 93 a.a.
• Molecular weight: 10386.27 Da
• Isoelectric Point: 5.1369

>NTDB_id=299467 DP112_RS00805 WP_114866111.1 126477..126758(+) (comYC) [Streptococcus suis strain HA1003]
MKKLIEVKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAAVVKVVESQMELYELEYDKEATVADLQAAGYI
TQKQAEQYAEAKK

Nucleotide

• Length: 282 bp

>NTDB_id=299467 DP112_RS00805 WP_114866111.1 126477..126758(+) (comYC) [Streptococcus suis strain HA1003]
ATGAAAAAGTTAATTGAAGTGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTAGTCGTTTTGGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGCTGTTGTCAAAGTAG
TAGAGAGTCAGATGGAGCTCTATGAATTGGAATATGATAAGGAAGCAACGGTGGCAGATTTGCAGGCAGCAGGCTATATT
ACTCAAAAACAAGCGGAGCAGTATGCTGAGGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	91.398	100	0.914
comGC/cglC	Streptococcus pneumoniae Rx1	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae D39	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae R6	61.702	100	0.624
comGC/cglC	Streptococcus pneumoniae TIGR4	61.702	100	0.624
comGC/cglC	Streptococcus mitis NCTC 12261	61.702	100	0.624
comGC/cglC	Streptococcus mitis SK321	61.702	100	0.624
comYC	Streptococcus gordonii str. Challis substr. CH1	64.045	95.699	0.613
comYC	Streptococcus mutans UA140	61.111	96.774	0.591
comYC	Streptococcus mutans UA159	61.111	96.774	0.591
comGC	Lactococcus lactis subsp. cremoris KW2	56.667	96.774	0.548
comGC	Staphylococcus aureus N315	47.436	83.871	0.398
comGC	Staphylococcus aureus MW2	47.436	83.871	0.398
comGC	Latilactobacillus sakei subsp. sakei 23K	42.169	89.247	0.376
comGC	Bacillus subtilis subsp. subtilis str. 168	48.611	77.419	0.376