Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DP112_RS00800 Genome accession   NZ_CP030125
Coordinates   125438..126475 (+) Length   345 a.a.
NCBI ID   WP_238139242.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120438..131475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00785 (DP112_00785) - 123138..123512 (+) 375 WP_024385120.1 DUF1033 family protein -
  DP112_RS00790 (DP112_00790) - 123540..124490 (-) 951 WP_105134139.1 S66 peptidase family protein -
  DP112_RS00795 (DP112_00795) comYA 124576..125526 (+) 951 WP_105149231.1 competence type IV pilus ATPase ComGA Machinery gene
  DP112_RS00800 (DP112_00800) comYB 125438..126475 (+) 1038 WP_238139242.1 competence type IV pilus assembly protein ComGB Machinery gene
  DP112_RS00805 (DP112_00805) comYC 126477..126758 (+) 282 WP_114866111.1 competence type IV pilus major pilin ComGC Machinery gene
  DP112_RS00810 (DP112_00810) comGD 126739..127146 (+) 408 WP_114866112.1 competence type IV pilus minor pilin ComGD -
  DP112_RS00815 (DP112_00815) comYE 127118..127411 (+) 294 WP_114866113.1 competence type IV pilus minor pilin ComGE Machinery gene
  DP112_RS00820 (DP112_00820) comGF/cglF 127398..127832 (+) 435 WP_024407345.1 competence type IV pilus minor pilin ComGF Machinery gene
  DP112_RS00825 (DP112_00825) comGG 127810..128220 (+) 411 WP_114866114.1 competence type IV pilus minor pilin ComGG -
  DP112_RS00830 (DP112_00830) comYH 128277..129230 (+) 954 WP_114866115.1 class I SAM-dependent methyltransferase Machinery gene
  DP112_RS00835 (DP112_00835) - 129280..130467 (+) 1188 WP_114866116.1 acetate kinase -
  DP112_RS00845 (DP112_00845) - 130783..131334 (+) 552 WP_074391332.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38999.00 Da        Isoelectric Point: 9.3127

>NTDB_id=299466 DP112_RS00800 WP_238139242.1 125438..126475(+) (comYB) [Streptococcus suis strain HA1003]
MSKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLQFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIKVFSRLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLERSLSNGQSFHEHIKTYAFFKRELSLIIEYGQVKSKLGSELTVYAVECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=299466 DP112_RS00800 WP_238139242.1 125438..126475(+) (comYB) [Streptococcus suis strain HA1003]
ATGAGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTAAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTGCAGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAGAAACTGATTGAGGTGGCGACCTATCCGATTATCTTGC
TTGGTTTTCTGCTCTTGATTATGCTGGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCATG
CTAATTAATCATCTACCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTTGCGGTCTTAGCTGGTCTTGTTTGGTT
TCGCAAAACTAACAAAATCAAGGTCTTTTCCCGCTTAGCTGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGAAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGTTTGATGCAGGAG
CAGCAATCACAGCTTTTTCGGGAGATTGGCCAGGACCTGGAGCGGTCGCTCTCCAATGGTCAGAGTTTTCACGAACACAT
CAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTATCGAATATGGTCAGGTCAAGTCCAAGTTGGGGAGCGAGT
TGACAGTCTATGCAGTCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATACAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTTATCTACGCAGCTATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

61.493

97.101

0.597
  comGB/cglB Streptococcus mitis SK321

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.475

99.42

0.591
  comYB Streptococcus mutans UA159

59.475

99.42

0.591
  comGB/cglB Streptococcus pneumoniae Rx1

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae D39

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae R6

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae TIGR4

60.597

97.101

0.588
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496

Multiple sequence alignment