Detailed information NTG0299469

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: DP112_RS00820
• Genome accession: NZ_CP030125
• Coordinates: 127398..127832 (+)
• Length: 144 a.a.
• NCBI ID: WP_024407345.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA1003
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 122398..132832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP112_RS00785 (DP112_00785)	-	123138..123512 (+)	375	WP_024385120.1	DUF1033 family protein	-
DP112_RS00790 (DP112_00790)	-	123540..124490 (-)	951	WP_105134139.1	S66 peptidase family protein	-
DP112_RS00795 (DP112_00795)	comYA	124576..125526 (+)	951	WP_105149231.1	competence type IV pilus ATPase ComGA	Machinery gene
DP112_RS00800 (DP112_00800)	comYB	125438..126475 (+)	1038	WP_238139242.1	competence type IV pilus assembly protein ComGB	Machinery gene
DP112_RS00805 (DP112_00805)	comYC	126477..126758 (+)	282	WP_114866111.1	competence type IV pilus major pilin ComGC	Machinery gene
DP112_RS00810 (DP112_00810)	comGD	126739..127146 (+)	408	WP_114866112.1	competence type IV pilus minor pilin ComGD	-
DP112_RS00815 (DP112_00815)	comYE	127118..127411 (+)	294	WP_114866113.1	competence type IV pilus minor pilin ComGE	Machinery gene
DP112_RS00820 (DP112_00820)	comGF/cglF	127398..127832 (+)	435	WP_024407345.1	competence type IV pilus minor pilin ComGF	Machinery gene
DP112_RS00825 (DP112_00825)	comGG	127810..128220 (+)	411	WP_114866114.1	competence type IV pilus minor pilin ComGG	-
DP112_RS00830 (DP112_00830)	comYH	128277..129230 (+)	954	WP_114866115.1	class I SAM-dependent methyltransferase	Machinery gene
DP112_RS00835 (DP112_00835)	-	129280..130467 (+)	1188	WP_114866116.1	acetate kinase	-
DP112_RS00845 (DP112_00845)	-	130783..131334 (+)	552	WP_074391332.1	folate family ECF transporter S component	-
DP112_RS00850 (DP112_00850)	-	131390..132652 (+)	1263	WP_114866118.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16357.67 Da
• Isoelectric Point: 7.1649

>NTDB_id=299469 DP112_RS00820 WP_024407345.1 127398..127832(+) (comGF/cglF) [Streptococcus suis strain HA1003]
MLKSKIPAFTLLECLVALVILSGSLLVFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQADLVKVENGKVYVDKGG
QALAFGKSRSDDFRKTNDRGQGYQPMLYHLDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide

• Length: 435 bp

>NTDB_id=299469 DP112_RS00820 WP_024407345.1 127398..127832(+) (comGF/cglF) [Streptococcus suis strain HA1003]
TTGTTAAAAAGTAAAATTCCTGCTTTTACTCTCTTGGAATGCTTGGTAGCCTTAGTCATTCTTTCAGGTAGTCTTCTGGT
CTTTGAAGGCTTGTCAAAACTGCTGGTCCAAGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGTCAATTGCGGTCGGAGTGGGACCAGGCTGACTTGGTCAAGGTTGAAAATGGCAAGGTCTATGTTGATAAGGGAGGG
CAGGCTTTGGCCTTTGGTAAGTCACGGTCGGATGATTTTCGGAAAACAAATGACAGAGGACAGGGCTACCAGCCCATGCT
CTATCATCTAGACAGCGCAGCTATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAATGGAGAGGAGC
GGACTTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae TIGR4	54.61	97.917	0.535
comGF/cglF	Streptococcus pneumoniae Rx1	54.61	97.917	0.535
comGF/cglF	Streptococcus pneumoniae D39	54.61	97.917	0.535
comGF/cglF	Streptococcus pneumoniae R6	54.61	97.917	0.535
comGF/cglF	Streptococcus mitis NCTC 12261	55.224	93.056	0.514
comYF	Streptococcus mutans UA140	50	100	0.5
comYF	Streptococcus mutans UA159	49.306	100	0.493
comGF/cglF	Streptococcus mitis SK321	52.239	93.056	0.486
comGF	Lactococcus lactis subsp. cremoris KW2	47.518	97.917	0.465